View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_19 (Length: 414)
Name: NF13938_high_19
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 8289843 - 8290095
Alignment:
| Q |
1 |
cgcaggagggatagtaagagagtgtgcagaaaagtataatgatgcagcaaagttattcaactcaaaactctcaaagcagcttgattctctaagtcagaac |
100 |
Q |
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| T |
8289843 |
cgcaggagggatagtaagagagtgtgcagaaaagtataatgatgcagcaaagttattcaactcaaaactctcaaagcagcttgattctctaagtcagaac |
8289942 |
T |
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| Q |
101 |
tcacccaatagccggatagtttacattgatgtttacactcctctacttgatatcattgtcaactaccaaaaatatggtaattcctattttatcttaactt |
200 |
Q |
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| T |
8289943 |
tcacccaatagccggatagtttacattgatgtttacactcctctacttgatatcattgtcaactaccaaaaatatggtaattcctattttatcttaactt |
8290042 |
T |
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| Q |
201 |
aattagtcatagaattgtgagaataaatttagagttcttttattacaaattat |
253 |
Q |
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| T |
8290043 |
aattagtcatagaattgttagaataaatttagagttcttttattacaaattat |
8290095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 8254270 - 8254344
Alignment:
| Q |
109 |
tagccggatagtttacattgatgtttacactcctctacttgatatcattgtcaactaccaaaaatatggtaattc |
183 |
Q |
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| T |
8254270 |
tagcaggattgtttatatggatgtttacaaccctatacttgatatcattgtaaactaccaaaaatatggtaattc |
8254344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 8244698 - 8244779
Alignment:
| Q |
109 |
tagccggatagtttacattgatgtttacactcctctacttgatatcattgtcaactaccaaaaatatggtaattcctatttt |
190 |
Q |
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| T |
8244698 |
tagcaggatcgtttacatggatgtttacagccctctactcgatattattgtaaacaaccaaaaatatggtaattccaatttt |
8244779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 31242638 - 31242677
Alignment:
| Q |
144 |
tacttgatatcattgtcaactaccaaaaatatggtaattc |
183 |
Q |
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| T |
31242638 |
tacttgatatcattgtaaactacaaaaaatatggtaattc |
31242677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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