View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_2 (Length: 622)
Name: NF13938_high_2
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 16 - 603
Target Start/End: Original strand, 385959 - 386546
Alignment:
| Q |
16 |
tgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttgaggtggctg |
115 |
Q |
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| T |
385959 |
tgaaatgaagacgatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttgaggtggctg |
386058 |
T |
|
| Q |
116 |
cgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcagccaagccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386059 |
cgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcagccaagccac |
386158 |
T |
|
| Q |
216 |
ttcttgaaacatatgttaactccgctgcaaaagttgatttgattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386159 |
ttcttgaaacatatgttaactccgctgcaaaagttgatttcattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
386258 |
T |
|
| Q |
316 |
gcatttgatgtctatccttagtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacagtccccgaacagaggggacaaccggtgttgact |
415 |
Q |
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| T |
386259 |
gcatttgatgtctatccttagtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacaggccccgaacagaggggacaaccggtgttgact |
386358 |
T |
|
| Q |
416 |
tttgtaagggaattctttcaaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggac |
515 |
Q |
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| T |
386359 |
tttgtaagggaattctttcgaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggac |
386458 |
T |
|
| Q |
516 |
agataaatcgagcttgatgtgtttggaaggttgcttatgagaataaacttttcccaaaggctatagttttcgatcagcacattgcttg |
603 |
Q |
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| T |
386459 |
agataaatcgagctcgatgtgtttggaaggttgcttatgagaataaacttttctcaaaggctatagttttcgatcagcacattgcttg |
386546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 16 - 603
Target Start/End: Complemental strand, 38729583 - 38728996
Alignment:
| Q |
16 |
tgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttgaggtggctg |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
38729583 |
tgaaatgaagacaatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcagtcgatcttgctttgagatggcta |
38729484 |
T |
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| Q |
116 |
cgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcagccaagccac |
215 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| ||||||||||| | |
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| T |
38729483 |
cgtttcatgggttcctcagggatcagaaccaataattttataatcaggcagttgtttgagtcgtgcatgaaaaatgggatatacgaatcagccaagcctc |
38729384 |
T |
|
| Q |
216 |
ttcttgaaacatatgttaactccgctgcaaaagttgatttgattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
315 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729383 |
ttcttgaaacatatgtgaactccgctgcaaaagttgatttgatactttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
38729284 |
T |
|
| Q |
316 |
gcatttgatgtctatccttagtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacagtccccgaacagaggggacaaccggtgttgact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
38729283 |
gcatttgatgtctatccttagtgcaacaaagcataaggcgcactcgtttatgtgtggactattcacaggccccgaacagaggggacagccggtgttgaca |
38729184 |
T |
|
| Q |
416 |
tttgtaagggaattctttcaaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggac |
515 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38729183 |
tttgtaagagaattctttcaaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattatctagttcttatgggac |
38729084 |
T |
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| Q |
516 |
agataaatcgagcttgatgtgtttggaaggttgcttatgagaataaacttttcccaaaggctatagttttcgatcagcacattgcttg |
603 |
Q |
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| T |
38729083 |
agataaatcgagctcggtgtgtttggaaggttgcttatgagaataaacttttcccaaaggctatagttttcgatcagcacatagcttg |
38728996 |
T |
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