View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_high_20 (Length: 395)

Name: NF13938_high_20
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_high_20
NF13938_high_20
[»] chr5 (2 HSPs)
chr5 (46-378)||(11441120-11441451)
chr5 (49-373)||(11451644-11451963)
[»] chr4 (4 HSPs)
chr4 (49-275)||(29913213-29913436)
chr4 (297-347)||(29913150-29913200)
chr4 (8-46)||(35609488-35609526)
chr4 (8-45)||(35609710-35609747)
[»] chr3 (1 HSPs)
chr3 (8-45)||(45138970-45139007)
[»] chr2 (2 HSPs)
chr2 (8-43)||(789393-789428)
chr2 (8-45)||(15124782-15124819)
[»] scaffold0092 (1 HSPs)
scaffold0092 (8-45)||(5703-5740)
[»] chr6 (1 HSPs)
chr6 (8-45)||(9705302-9705339)
[»] chr1 (2 HSPs)
chr1 (9-46)||(39348117-39348154)
chr1 (8-48)||(42586435-42586475)
[»] chr7 (1 HSPs)
chr7 (8-48)||(43688156-43688196)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 46 - 378
Target Start/End: Original strand, 11441120 - 11441451
Alignment:
Q  46 ataaaaaatacagattttattttacctttcataattgaaggacctctcaaccaaagctcaccacttctgcctgggggcaaaaatgcaccacgattccaat 145  Q
    ||||||||| |||| ||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11441120 ataaaaaatgcagaatttgttttacctttcatggttgaaggccctctcaaccaaagctcaccacttctgcctgggggcaaaaaagcaccactattccaat 11441219  T
Q  146 ctaccacttttgcctccatgtttggtgctaacaaccctagtgaagaatagttgtgaaacttttcagtattgaaaccgcatgctgctaatgcaccagactc 245  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||| ||||| |||||||||||||||||| ||| ||  || |||||    
T  11441220 ctaccacttttgcctccatgtttggagctaacaaccctagcgaggaatagttgcgaaatttttctgtattgaaaccgcatgctcctactgtgcccgactc 11441319  T
Q  246 ggtcattccataaccctaaaaagaaacaatttcacagatgcacacccttaaaataatctaggaaaacaacattattaacatcatcaagcaaagttcaact 345  Q
     ||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11441320 agtcattccataaccctaaaaagaaacaattttacagctgcacatccttaaaa-aatctaggaaaacaacattattaacatcatcaagtaaagttcaact 11441418  T
Q  346 ttgatagtccagaacatgttgtatatgtgaaca 378  Q
    ||||||||||||||| |||||| ||||||||||    
T  11441419 ttgatagtccagaacttgttgtgtatgtgaaca 11441451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 49 - 373
Target Start/End: Original strand, 11451644 - 11451963
Alignment:
Q  49 aaaaatacagattttattttacctttcataattgaaggacctctcaaccaaagctcaccacttctgcctgggggcaaaaatgcaccacgattccaatcta 148  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||||||||||||| ||   ||||||||||||||||| |||||  ||||||||||    
T  11451644 aaaaatacagatttt---ttacctttcataattgaaggccctctcaaccaaagctcaccgctgaggcctgggggcaaaaatgtaccacttttccaatcta 11451740  T
Q  149 ccacttttgcctccatgtttggtgctaacaaccctagtgaagaatagttgtgaaacttttcagtattgaaaccgcatgctgctaatgcaccagactcggt 248  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| || | ||| ||| || ||||| ||    
T  11451741 ccacttttgcctctatgtttggagctaacaaccctagtgaggaatagttgtgaaacttatcagtattgaagccgcgtgttcctactgcgcccgactcagt 11451840  T
Q  249 cattccataaccctaaaaagaaacaatttcacagatgcacacccttaaaataatctaggaaaacaacattattaacatcatcaagcaaagttcaactttg 348  Q
    |||||||||||||||||||||| ||||   |||| |||||| |||||||  ||||||||||| ||||||| ||| |||    ||| ||||||||||| |     
T  11451841 cattccataaccctaaaaagaagcaatcatacagctgcacatccttaaa--aatctaggaaatcaacatttttaccatacagaagtaaagttcaactatt 11451938  T
Q  349 atagtccagaacatgttgtatatgt 373  Q
    || |||||||||||| |||| ||||    
T  11451939 atggtccagaacatgctgtaaatgt 11451963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 275
Target Start/End: Complemental strand, 29913436 - 29913213
Alignment:
Q  49 aaaaatacagattttattttacctttcataattgaaggacctctcaaccaaagctcaccacttctgcctgggggcaaaaatgcaccacgattccaatcta 148  Q
    |||||||||||||||   |||||| ||||||| ||||| |||||||||||||||||||| |  ||||||||||||||||| | ||||   ||||| ||||    
T  29913436 aaaaatacagatttt---ttacctctcataatagaaggccctctcaaccaaagctcaccgcagctgcctgggggcaaaaaagtaccattgttccagtcta 29913340  T
Q  149 ccacttttgcctccatgtttggtgctaacaaccctagtgaagaatagttgtgaaacttttcagtattgaaaccgcatgctgctaatgcaccagactcggt 248  Q
    |||||||||||||| ||||||| || |||||||||| ||| ||||||||||||||||||||||||||||| || | || | | | ||||   ||||||||    
T  29913339 ccacttttgcctccgtgtttggagccaacaaccctattgacgaatagttgtgaaacttttcagtattgaagccacgtgttcccactgcagtcgactcggt 29913240  T
Q  249 cattccataaccctaaaaagaaacaat 275  Q
    |||||||||||||||||||||||||||    
T  29913239 cattccataaccctaaaaagaaacaat 29913213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 29913200 - 29913150
Alignment:
Q  297 aataatctaggaaaacaacattattaacatcatcaagcaaagttcaacttt 347  Q
    |||||||||||||||||||||||||| ||| | |||  |||||||||||||    
T  29913200 aataatctaggaaaacaacattattatcataaacaaataaagttcaacttt 29913150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 35609526 - 35609488
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaagaa 46  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  35609526 ttgtggggttgtgtaacacccaaccacgatttctaagaa 35609488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 35609747 - 35609710
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaaga 45  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  35609747 ttgtggggttgtgtaagacccaaccatgatttctaaga 35609710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 45139007 - 45138970
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaaga 45  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  45139007 ttgtggggttgtgtaagacccaaccacgatttctaaga 45138970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 789428 - 789393
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaa 43  Q
    ||||||||||||||||||||| ||||||||||||||    
T  789428 ttgtggggttgtgtaagacccaaccacgatttctaa 789393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 15124819 - 15124782
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaaga 45  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  15124819 ttgtggggttgtgttagacccaaccacgatttctaaga 15124782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 5703 - 5740
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaaga 45  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  5703 ttgtggggttgtgttagacccaaccacgatttctaaga 5740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 9705302 - 9705339
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaaga 45  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  9705302 ttgtggggttgtgttagacccaaccacgatttctaaga 9705339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 39348154 - 39348117
Alignment:
Q  9 tgtggggttgtgtaagacccgaccacgatttctaagaa 46  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  39348154 tgtggggttgtgttagacccaaccacgatttctaagaa 39348117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 42586475 - 42586435
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaagaata 48  Q
    |||||||||||||| || ||| |||||||||||||||||||    
T  42586475 ttgtggggttgtgttaggcccaaccacgatttctaagaata 42586435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 43688196 - 43688156
Alignment:
Q  8 ttgtggggttgtgtaagacccgaccacgatttctaagaata 48  Q
    |||||||||||||| || ||| |||||||||||||||||||    
T  43688196 ttgtggggttgtgttaggcccaaccacgatttctaagaata 43688156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University