View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_21 (Length: 386)
Name: NF13938_high_21
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 26086544 - 26086911
Alignment:
| Q |
19 |
cctctgtcatgtcacttctaatacgaattgtctgaattaacaatttatacatagttgttgtcttcgaccttggcatatgtgcaagtgtgggagcatcagc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
26086544 |
cctctgtcatgtcacttctaatacgaattgtctgaattaacaatttatacatagttgttttcttcgaccttagcatatgtgcaagtgtgggagcatcagc |
26086643 |
T |
|
| Q |
119 |
gacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattctttgcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26086644 |
gacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattctttgcc |
26086743 |
T |
|
| Q |
219 |
tcgaaatttataccagtacttagcaacaatagaagtttctgtgctaccacgtagttaataaaaaatataaatgttagagatcattcaagttagcaacaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26086744 |
tcgaaatttataccagtacttagcaacaatagaagtttctgtgctaccacgtagttaataaaaaatataaatgttagagatcattcaagttagcaacaat |
26086843 |
T |
|
| Q |
319 |
gccacaaatcttatttacaagttgtctttcttgttttcaagaaatacgacaattaattacaacaaagc |
386 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26086844 |
gccacaaatcttatttataagttgtctttcttgttttcaagaaatacgacaattaattacaacaaagc |
26086911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 94 - 315
Target Start/End: Complemental strand, 14727630 - 14727409
Alignment:
| Q |
94 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
193 |
Q |
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|||||||| |||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||| |||| ||| ||||||| |||||||||||| |
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| T |
14727630 |
tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc |
14727531 |
T |
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| Q |
194 |
tgttttattctccaaattctttgcctcgaaatttataccagtacttagcaacaatagaagtttctgtgctaccacgtagttaataaaaaatataaatgtt |
293 |
Q |
| |
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|||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| ||||||||||| ||| ||||| || | || | |||| |
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| T |
14727530 |
tgttttgttctccaaattcttttccttcaaatttataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgtt |
14727431 |
T |
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| Q |
294 |
agagatcattcaagttagcaac |
315 |
Q |
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||| |||||||| || |||||| |
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| T |
14727430 |
agaaatcattcatgtaagcaac |
14727409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 30648714 - 30648607
Alignment:
| Q |
147 |
cttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattctttgcctcgaaatttataccagtacttagcaaca |
246 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||| |||||||||||||| ||||| |
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| T |
30648714 |
cttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctcactattctttgccttcaaatctataccagtacttaccaaca |
30648615 |
T |
|
| Q |
247 |
atagaagt |
254 |
Q |
| |
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|||||||| |
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| T |
30648614 |
atagaagt |
30648607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 28865830 - 28865710
Alignment:
| Q |
95 |
atgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgct |
194 |
Q |
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||||||| ||||||||||||| | |||||| | ||| | ||||| ||| || || |||||||||||||| |||| |||| ||||||||||||| |||||| |
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| T |
28865830 |
atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctggaatgcttgctatgtccaatgct |
28865731 |
T |
|
| Q |
195 |
gttttattctccaaattcttt |
215 |
Q |
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||||||||||||||||||||| |
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| T |
28865730 |
gttttattctccaaattcttt |
28865710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 26089131 - 26089008
Alignment:
| Q |
93 |
atatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatg |
192 |
Q |
| |
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||||||| || |||||||||||||| || ||| ||||||| ||||||||| ||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
26089131 |
atatgtgaaattgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttcacatctggagtgcttgctatgtctaatg |
26089032 |
T |
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| Q |
193 |
ctgttttattctccaaattctttg |
216 |
Q |
| |
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| T |
26089031 |
cggttttgttctccagattctttg |
26089008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 15329678 - 15329613
Alignment:
| Q |
150 |
aataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattcttt |
215 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15329678 |
aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
15329613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 15510047 - 15509982
Alignment:
| Q |
150 |
aataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattcttt |
215 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15510047 |
aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
15509982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 253
Target Start/End: Original strand, 17292838 - 17292997
Alignment:
| Q |
94 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
193 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||| ||||| ||| || || ||||| ||||||||| ||| | ||||| || ||||||||||| |
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| T |
17292838 |
tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactcttgttctctagagtggcggcaatgtctaatgc |
17292937 |
T |
|
| Q |
194 |
tgttttattctccaaattctttgcctcgaaatttataccagtacttagcaacaatagaag |
253 |
Q |
| |
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|||||| |||||||||||||| |||| |||||||| |||||||||| ||||||| |||| |
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| T |
17292938 |
tgttttgttctccaaattcttcgccttcaaatttatcccagtacttaccaacaatcgaag |
17292997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 6611070 - 6611184
Alignment:
| Q |
94 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
193 |
Q |
| |
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||||||||||||||||| || || |||||| | ||||| ||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
6611070 |
tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgc |
6611169 |
T |
|
| Q |
194 |
tgttttattctccaa |
208 |
Q |
| |
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|||||| ||||||| |
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|
| T |
6611170 |
tgttttgctctccaa |
6611184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 4819792 - 4819672
Alignment:
| Q |
94 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
193 |
Q |
| |
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|||||||||||||||| |||| | |||||||| || || ||||||||| | ||| |||||||||||||||||| | ||| ||| |||||||||| |
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| T |
4819792 |
tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctctctagtcactgccatgtctaatga |
4819693 |
T |
|
| Q |
194 |
tgttttattctccaaattctt |
214 |
Q |
| |
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|||||| || ||||| ||||| |
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|
| T |
4819692 |
tgttttgttttccaagttctt |
4819672 |
T |
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