View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_high_26 (Length: 316)

Name: NF13938_high_26
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_high_26
NF13938_high_26
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-285)||(5309-5593)


Alignment Details
Target: scaffold0197 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 5593 - 5309
Alignment:
Q  1 ttgtaggctaagatggttgaactatctacgtcctaacataaagagaggaaattttgctgaggaggaagtggaaatgattgtcaaactccacaaattatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5593 ttgtaggctaagatggttgaactatctacgtcctaacataaagagaggaaattttgctgaggaggaagtggaaatgattgtcaaactccacaaattatta 5494  T
Q  101 ggcaacaggtaaactttgatctttaagactttcctttggtattttctaatgtgttctaagttctaacaactaggcatgggccatgatagccttatgcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493 ggcaacaggtaaactttgatctttaagactttcctttggtattttctaatgtgttctaagttctaacaactaggcatgggccatgatagccttatgcagt 5394  T
Q  201 ttttccaaaggtgttaaagctcattagtgaagagtgtgcatagtaaaaagttagtgttcaagtatagtaaatgatgttctcgctg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5393 ttttccaaaggtgttaaagctcattagtgaagagtgtgcatagtaaaaagttagtgttcaagtatagtaaatgatgttctcgctg 5309  T

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