View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_high_27 (Length: 311)

Name: NF13938_high_27
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_high_27
NF13938_high_27
[»] chr5 (10 HSPs)
chr5 (1-299)||(35423365-35423663)
chr5 (1-299)||(35376106-35376404)
chr5 (1-299)||(35754514-35754812)
chr5 (14-234)||(35370007-35370229)
chr5 (15-296)||(35366563-35366844)
chr5 (84-291)||(35406300-35406507)
chr5 (17-181)||(35436831-35436995)
chr5 (1-78)||(35410594-35410671)
chr5 (42-132)||(35385214-35385304)
chr5 (1-48)||(35385963-35386010)
[»] chr1 (4 HSPs)
chr1 (1-299)||(10415879-10416177)
chr1 (15-297)||(10420780-10421062)
chr1 (2-149)||(10410189-10410336)
chr1 (169-299)||(10410332-10410464)
[»] chr7 (1 HSPs)
chr7 (14-299)||(29623333-29623617)
[»] chr2 (3 HSPs)
chr2 (15-243)||(30662778-30663006)
chr2 (15-243)||(30625827-30626055)
chr2 (15-243)||(30671458-30671686)
[»] chr8 (1 HSPs)
chr8 (17-159)||(13564470-13564612)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 35423663 - 35423365
Alignment:
Q  1 attgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423663 attgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaa 35423564  T
Q  101 acagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423563 acagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatca 35423464  T
Q  201 aagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423463 aagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 35423365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 35376404 - 35376106
Alignment:
Q  1 attgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaa 100  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35376404 attgcattccgcaatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaatagatcctttgtaa 35376305  T
Q  101 acagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35376304 acagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatca 35376205  T
Q  201 aagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35376204 aagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacgattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 35376106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 35754812 - 35754514
Alignment:
Q  1 attgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaa 100  Q
    |||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||    
T  35754812 attgcattccgctatgaaactttttgttgctccacgtgtttcaagattcaacacctttacaacaataggtctttcaaagttgagaagagatcctttataa 35754713  T
Q  101 acagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatca 200  Q
    ||||| || ||||||||||| || |||||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||||||  || | |||  ||    
T  35754712 acagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctccataagtaaccctcaacttctcatttcgca 35754613  T
Q  201 aagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 299  Q
    |||||||||||||||  ||| |||||| ||||||| ||||||| |||||| || || ||||||||| |||||||| ||||||||||| |||| ||||||    
T  35754612 aagatggtgaagaaggcaactttttggactttctcatgagaaaatgaacagttatagaagctatgaaagagatcaaaaccccaccaagtacaatgatga 35754514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 35370229 - 35370007
Alignment:
Q  14 atgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||   |||||||||||||||||||||| || ||||    
T  35370229 atgaaactctttgctgctccacgtgtttcaagattcaacacctttaacacaataggtctttcaaagtttggaagagatcctttgtaaacagagccaaagc 35370130  T
Q  114 ttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctcc--ataagtaaccctcaagctcccgtttatcaaagatggtgaa 211  Q
    ||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  35370129 ttcatgtaccaaccaaattggatgaagaaaacccaatggttgcttcatgtagctctccatataggtaaccctcaagctcccgtttatcaaagatggtgaa 35370030  T
Q  212 gaagataaccttttgggctttct 234  Q
    |||| ||||||||||||||||||    
T  35370029 gaaggtaaccttttgggctttct 35370007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 35366844 - 35366563
Alignment:
Q  15 tgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagct 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| || ||    
T  35366844 tgaaactctttgctgctccacgtgttttaagattcaacacctttacaacaatgggtttttcaaagttgagaagagatcctttgtaaacagaaccaaaact 35366745  T
Q  115 tcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatcaaagatggtgaagaa 214  Q
    |||||| || |||||||||||||||||||| |||| |||||||||||||||||||| |||||||| | ||||  |||| |||  ||||||||||||||||    
T  35366744 tcctgttccaaccaaattggatgaagaaaagccatcggttgcttcatgtagctctctataagtaatcatcaaattccctttttgcaaagatggtgaagaa 35366645  T
Q  215 gataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactga 296  Q
    | |||| |||||| |||||| |  ||||| || | |||| ||||| |||||| |||||||| |||| | || ||||||||||    
T  35366644 ggtaacattttggtctttcttggaagaaaatggaaaattataaaaactatgaaagagatcaaaaccacgccgattacactga 35366563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 84 - 291
Target Start/End: Complemental strand, 35406507 - 35406300
Alignment:
Q  84 gaagagatcctttgtaaacagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccct 183  Q
    |||||||||||||||||||||| || ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  35406507 gaagagatcctttgtaaacagagccaaagcttcctgttcctaccaaattggaagaagaaaaaccattggttgcttcatgtagctctccataagtaaccct 35406408  T
Q  184 caagctcccgtttatcaaagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaacccca 283  Q
    |||  || | |||  ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||    
T  35406407 caatttctcatttcgcaaagatggtgaagatggtaaccttttggactttctcgtgagaaaatgaacaattataaaagttatgacagagatcacaaaccca 35406308  T
Q  284 ccaattac 291  Q
    ||||||||    
T  35406307 ccaattac 35406300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 35436995 - 35436831
Alignment:
Q  17 aaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagcttc 116  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||  ||||||||  |||||| |  ||||||||||||||||| |||||||| || ||||    
T  35436995 aaactctttgatgccccacgtgtttcaagtttcaacacctttactacaataggtccttcaaatttaagaagagatcctttgtatacagaaccaaaacttc 35436896  T
Q  117 ctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaacc 181  Q
    |||  || ||||| ||||||||||||||||| ||||||||||||||||  ||  |||||||||||    
T  35436895 ctgcgcctaccaagttggatgaagaaaatccgttggttgcttcatgtaaatcctcataagtaacc 35436831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35410671 - 35410594
Alignment:
Q  1 attgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaa 78  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  35410671 attgcattccgccatgaaactctttgttgcttcacgtgtttcaagattcaacacctttacaacaataggtctttcaaa 35410594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 35385304 - 35385214
Alignment:
Q  42 caagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagcttcctgtaccgaccaaatt 132  Q
    |||||||||| ||||||| |||||||||  ||||||||| ||||||||||||||| |||||||| || ||||||||||  || ||||||||    
T  35385304 caagattcaagacctttatagcaatagggctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgctccaaccaaatt 35385214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35386010 - 35385963
Alignment:
Q  1 attgcattccaccatgaaactctttgctgctccacgtgtttcaagatt 48  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  35386010 attgcattctgccatgaaactctttgctgctccacgtgtttcaagatt 35385963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 10415879 - 10416177
Alignment:
Q  1 attgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    |||||||||||||||||    
T  10415879 attgcattcctccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacaacaataggtctttcaaagcttggaagagatcctttgtaa 10415978  T
Q  101 acagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatca 200  Q
    ||||| || ||||||||||| || ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||  ||||||||  ||    
T  10415979 acagagccaaagcttcctgttcctaccaaattggaagaagaaaaaccattggttgattcatgtagctctccataagtaaccctcaatttcccgtttcgca 10416078  T
Q  201 aagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 299  Q
    ||||||||||||| | ||| ||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  10416079 aagatggtgaagatggtaagcttttggactttcttgtgagaaaatgaacaattataaaagctatgacagagatcacaaacccaccaattacactgatga 10416177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 10420780 - 10421062
Alignment:
Q  15 tgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagct 114  Q
    |||||||||||||| |||||| ||||| ||||||||| ||||||||| |||| |||||||||||||  |||||||||||||||||||||||||| || ||    
T  10420780 tgaaactctttgctcctccacatgttttaagattcaatacctttacaacaatgggtttttcaaagttaagaagagatcctttgtaaacagaaccaaaact 10420879  T
Q  115 tcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatcaaagatggtgaagaa 214  Q
    |||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||  |||| |||  | ||||||||||||||    
T  10420880 tcctgttccaaccaaattggatgaagaaaacccattggttgcttcatgtagctctctataagtaatcatcaaattccctttttgcgaagatggtgaagaa 10420979  T
Q  215 gataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgat 297  Q
    | |||| |||||| |||||| |  ||||| |  | |||| ||||| |||||| |||||||| |||| | ||||||||||||||    
T  10420980 ggtaacattttggtctttcttgaaagaaaatagaaaattataaaaactatgaaagagatcaaaaccacgccaattacactgat 10421062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 10410189 - 10410336
Alignment:
Q  2 ttgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaa 101  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10410189 ttgcattccaccacgaaactctttactgctccaggtgtttcaagattcaacacctttacaacaataggtctttcaaagtagagaagagatcctttgtaaa 10410288  T
Q  102 cagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccat 149  Q
    ||||||| || | |||| |||| |||||||||||||||||||||||||    
T  10410289 cagaaccaaatcctcctctacctaccaaattggatgaagaaaatccat 10410336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 299
Target Start/End: Original strand, 10410332 - 10410464
Alignment:
Q  169 tccataagtaaccctcaagctcccgtttatcaaagatggtgaagaaga--taaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatga 266  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||| || |||||||||||||| ||||||||| ||||||||||||    
T  10410332 tccataagtaaccctcaagctcccatttatcaaaaatggtgaagaagaggtaacctttttggatttctcgtgagaaaatgaacaattataaaagctatga 10410431  T
Q  267 cagagatcacaaccccaccaattacactgatga 299  Q
    |||| ||||||||||| || |||||||||||||    
T  10410432 cagaaatcacaaccccgccgattacactgatga 10410464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 29623333 - 29623617
Alignment:
Q  14 atgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||  ||||| | ||||||||||| |||| ||||| || ||||    
T  29623333 atgaaactctttgctgctccacgtgtttcaagattcaacacctttatggcaataggtcttcgaaagttgggaagagatcctatgtagacagatccaaagc 29623432  T
Q  114 ttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatcaaagatggtgaaga 213  Q
    ||||||  || | |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  || | |||  |||||||||||||||    
T  29623433 ttcctgctcctaacaaattagatgaagaatatccattggttgcttcatgtaggtctccataagtaaccctcaaattctcattttgcaaagatggtgaaga 29623532  T
Q  214 agataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacagagatcacaaccccaccaattacactgatga 299  Q
     | |||||||||||||||||| |||||||| ||  ||||| |||||||||||| ||| |||| ||| |||||| ||||| ||||||    
T  29623533 gggtaaccttttgggctttcttgtgagaaaatgggcaattataaaagctatgaaagatatca-aactccaccagttacaatgatga 29623617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 30663006 - 30662778
Alignment:
Q  15 tgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagct 114  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||| ||  | |||||    
T  30663006 tgaaactctttgtagctccacgtgcttgaagattcaacacctttacaacaataggtctttcaaagtaaaggagagatcctttgtaaacggaggcaaagct 30662907  T
Q  115 tcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatcaaagatggtgaagaa 214  Q
    |||||| || |||||||||||||||||||| |||||||| || ||||||| ||| |||||||||||||| ||| |||| ||| ||||||||||| ||| |    
T  30662906 tcctgtccctaccaaattggatgaagaaaacccattggtggcctcatgtatctcaccataagtaaccctgaagttcccatttttcaaagatggtaaagta 30662807  T
Q  215 gataaccttttgggctttctcgtgagaaa 243  Q
    | || |||||||| |||||||| ||||||    
T  30662806 ggtagccttttggactttctcgcgagaaa 30662778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 30626055 - 30625827
Alignment:
Q  15 tgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagct 114  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||  | |||||    
T  30626055 tgaaactctttgtagctccacgtgcttgaagattcaacacctttacaacaataggtctttcaaagtaaaggagagatcctttgtaaacagaggcaaagct 30625956  T
Q  115 tcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatcaaagatggtgaagaa 214  Q
    |||||| || |||||||| ||||||||||| |||||||| || ||||||| ||| |||||||||||||| ||| |||| ||| || |||||||| ||| |    
T  30625955 tcctgtccctaccaaatttgatgaagaaaacccattggtggcctcatgtatctcaccataagtaaccctgaagttcccatttttctaagatggtaaagta 30625856  T
Q  215 gataaccttttgggctttctcgtgagaaa 243  Q
    | || |||||||| |||||||| ||||||    
T  30625855 ggtagccttttggactttctcgcgagaaa 30625827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 30671686 - 30671458
Alignment:
Q  15 tgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagct 114  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||  | |||||    
T  30671686 tgaaactctttgtagctccacgtgcttgaagattcaacacctttacaacaataggtctttcaaagtaaaggagagatcctttgtaaacagaggcaaagct 30671587  T
Q  115 tcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctccataagtaaccctcaagctcccgtttatcaaagatggtgaagaa 214  Q
    |||||| || |||||||| ||||||||||| |||||||| || ||||||| ||| |||||||||||||| ||| |||| ||| || |||||||| ||| |    
T  30671586 tcctgtccctaccaaatttgatgaagaaaacccattggtggcctcatgtatctcaccataagtaaccctgaagttcccatttttcgaagatggtaaagta 30671487  T
Q  215 gataaccttttgggctttctcgtgagaaa 243  Q
    | || |||||||| |||||||| ||||||    
T  30671486 ggtagccttttggactttctcgcgagaaa 30671458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 13564612 - 13564470
Alignment:
Q  17 aaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggtttttcaaagtagagaagagatcctttgtaaacagaaccgaagcttc 116  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| |||  || ||||||||||||||||||||| ||||||     
T  13564612 aaactcttcgctgctcaacgtgtttcaagattcaacacttttacaacaataggtctttcaaaataggaaatagatcctttgtaaacagaaccaaagctta 13564513  T
Q  117 ctgtaccgaccaaattggatgaagaaaatccattggttgcttc 159  Q
     |||||| | || |||||||||||||||||| |||||||||||    
T  13564512 ttgtacctatcagattggatgaagaaaatccgttggttgcttc 13564470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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