View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_30 (Length: 284)
Name: NF13938_high_30
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 35696330 - 35696607
Alignment:
| Q |
1 |
tcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccagaa |
100 |
Q |
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| T |
35696330 |
tcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccagaa |
35696429 |
T |
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| Q |
101 |
cgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaag |
200 |
Q |
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| T |
35696430 |
cgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaag |
35696529 |
T |
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| Q |
201 |
agtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctca |
278 |
Q |
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| T |
35696530 |
agtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctca |
35696607 |
T |
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Back To:
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
149 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
248 |
Q |
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|||||||| |||||||||||||||||||| |||| || ||| |||||| ||||| || |||||||||||||| |||||||||||||||||| |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
249 |
ttctcattggaac |
261 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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