View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_high_6 (Length: 564)

Name: NF13938_high_6
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_high_6
NF13938_high_6
[»] chr8 (20 HSPs)
chr8 (281-531)||(3604534-3604785)
chr8 (18-207)||(3604770-3604960)
chr8 (281-403)||(29612949-29613070)
chr8 (283-403)||(14349235-14349355)
chr8 (311-403)||(44008446-44008538)
chr8 (217-278)||(43254343-43254403)
chr8 (324-396)||(587600-587672)
chr8 (324-396)||(626250-626322)
chr8 (311-403)||(41778739-41778830)
chr8 (311-396)||(12820648-12820734)
chr8 (324-396)||(27805367-27805440)
chr8 (310-403)||(33883115-33883205)
chr8 (311-396)||(13097183-13097267)
chr8 (217-278)||(24793204-24793264)
chr8 (325-372)||(5952402-5952450)
chr8 (338-397)||(45155039-45155096)
chr8 (357-403)||(5538536-5538582)
chr8 (338-403)||(37681284-37681347)
chr8 (336-372)||(25231372-25231408)
chr8 (357-401)||(43681653-43681697)
[»] scaffold1657 (1 HSPs)
scaffold1657 (284-403)||(227-346)
[»] chr7 (22 HSPs)
chr7 (284-407)||(22952784-22952907)
chr7 (319-396)||(24423214-24423291)
chr7 (284-396)||(30057921-30058032)
chr7 (217-280)||(47106224-47106286)
chr7 (217-280)||(42565301-42565363)
chr7 (311-403)||(22083195-22083287)
chr7 (218-278)||(31026117-31026176)
chr7 (324-403)||(23313256-23313335)
chr7 (284-373)||(26808519-26808608)
chr7 (217-280)||(13554792-13554854)
chr7 (217-278)||(46993693-46993753)
chr7 (310-403)||(11397821-11397911)
chr7 (310-403)||(5241930-5242021)
chr7 (217-278)||(19727938-19727998)
chr7 (310-403)||(10345440-10345529)
chr7 (320-396)||(17731094-17731166)
chr7 (357-403)||(4595770-4595816)
chr7 (357-403)||(22611496-22611542)
chr7 (217-278)||(43022127-43022187)
chr7 (325-372)||(1636723-1636771)
chr7 (348-384)||(23108183-23108219)
chr7 (325-372)||(44672818-44672866)
[»] chr6 (24 HSPs)
chr6 (324-396)||(9313545-9313617)
chr6 (324-403)||(16731616-16731695)
chr6 (217-278)||(13085001-13085061)
chr6 (217-278)||(6284176-6284236)
chr6 (311-396)||(28118107-28118192)
chr6 (311-403)||(2773157-2773249)
chr6 (314-390)||(11183845-11183921)
chr6 (324-396)||(12980496-12980568)
chr6 (324-396)||(12983383-12983455)
chr6 (327-403)||(20527157-20527233)
chr6 (281-396)||(34390200-34390315)
chr6 (319-396)||(28107524-28107599)
chr6 (217-278)||(7015179-7015239)
chr6 (319-408)||(6514272-6514359)
chr6 (345-403)||(20189182-20189240)
chr6 (345-403)||(22146751-22146809)
chr6 (217-278)||(1373263-1373323)
chr6 (217-278)||(1381011-1381071)
chr6 (310-398)||(13005460-13005546)
chr6 (311-404)||(15578666-15578759)
chr6 (324-381)||(16883846-16883903)
chr6 (334-372)||(5260101-5260139)
chr6 (319-396)||(28111576-28111651)
chr6 (320-368)||(2846583-2846631)
[»] chr4 (21 HSPs)
chr4 (311-396)||(24605007-24605092)
chr4 (217-278)||(10353413-10353473)
chr4 (217-278)||(37615032-37615092)
chr4 (324-396)||(7394630-7394702)
chr4 (310-403)||(56195793-56195883)
chr4 (310-403)||(56199120-56199210)
chr4 (334-384)||(2436969-2437019)
chr4 (217-278)||(10426493-10426552)
chr4 (217-278)||(955220-955280)
chr4 (217-278)||(9993464-9993524)
chr4 (217-278)||(42954119-42954179)
chr4 (311-403)||(26703237-26703329)
chr4 (310-403)||(3797580-3797670)
chr4 (282-396)||(4953780-4953890)
chr4 (340-403)||(19859267-19859328)
chr4 (310-395)||(15811909-15811991)
chr4 (310-372)||(53094776-53094838)
chr4 (310-396)||(19820981-19821063)
chr4 (357-397)||(5681736-5681776)
chr4 (310-403)||(19827688-19827777)
chr4 (325-372)||(54900053-54900101)
[»] scaffold0134 (1 HSPs)
scaffold0134 (324-396)||(7524-7596)
[»] chr1 (23 HSPs)
chr1 (279-362)||(2733503-2733586)
chr1 (324-396)||(22456496-22456568)
chr1 (324-389)||(49148068-49148133)
chr1 (324-396)||(8435406-8435478)
chr1 (217-277)||(20795132-20795191)
chr1 (324-396)||(22447952-22448024)
chr1 (324-396)||(22453186-22453258)
chr1 (217-280)||(39429742-39429804)
chr1 (315-403)||(17618858-17618946)
chr1 (303-395)||(47642801-47642893)
chr1 (324-379)||(34066515-34066570)
chr1 (217-280)||(49265578-49265640)
chr1 (217-278)||(6892883-6892943)
chr1 (348-403)||(3087500-3087554)
chr1 (340-402)||(23990132-23990195)
chr1 (348-403)||(34732102-34732157)
chr1 (357-403)||(21018223-21018269)
chr1 (357-403)||(21110914-21110960)
chr1 (325-366)||(17336881-17336922)
chr1 (325-372)||(25662881-25662929)
chr1 (325-372)||(28138634-28138682)
chr1 (325-372)||(28141884-28141932)
chr1 (310-403)||(29642987-29643076)
[»] chr3 (21 HSPs)
chr3 (324-390)||(50096950-50097016)
chr3 (311-396)||(9155082-9155167)
chr3 (303-384)||(26551851-26551932)
chr3 (217-280)||(20198711-20198773)
chr3 (217-278)||(10867163-10867222)
chr3 (217-278)||(53946519-53946579)
chr3 (217-278)||(14868414-14868474)
chr3 (217-278)||(24888579-24888639)
chr3 (328-368)||(26273333-26273373)
chr3 (349-396)||(9158302-9158349)
chr3 (317-396)||(25260951-25261030)
chr3 (357-403)||(16244278-16244324)
chr3 (217-278)||(27968701-27968760)
chr3 (357-403)||(30219752-30219798)
chr3 (324-372)||(19194015-19194064)
chr3 (348-403)||(32287068-32287121)
chr3 (310-372)||(10960161-10960223)
chr3 (310-372)||(10963668-10963730)
chr3 (310-372)||(10967177-10967239)
chr3 (225-278)||(27497232-27497284)
chr3 (325-372)||(10557833-10557881)
[»] scaffold0330 (1 HSPs)
scaffold0330 (281-390)||(14169-14277)
[»] chr5 (13 HSPs)
chr5 (217-278)||(15005647-15005707)
chr5 (311-396)||(17944895-17944980)
chr5 (217-278)||(13916155-13916214)
chr5 (324-396)||(36357026-36357099)
chr5 (324-402)||(35432230-35432313)
chr5 (338-396)||(18239276-18239334)
chr5 (217-278)||(3199754-3199814)
chr5 (217-278)||(19514093-19514153)
chr5 (357-403)||(4099292-4099338)
chr5 (357-403)||(21335460-21335506)
chr5 (217-278)||(8571384-8571444)
chr5 (310-403)||(7271295-7271384)
chr5 (325-372)||(22036134-22036182)
[»] chr2 (18 HSPs)
chr2 (217-278)||(3119429-3119489)
chr2 (311-396)||(30720049-30720134)
chr2 (217-280)||(9669620-9669682)
chr2 (217-278)||(11235083-11235143)
chr2 (310-403)||(45457411-45457501)
chr2 (217-278)||(32244228-32244288)
chr2 (310-403)||(13137147-13137236)
chr2 (310-403)||(43723959-43724048)
chr2 (351-402)||(17199704-17199755)
chr2 (356-403)||(31427307-31427354)
chr2 (357-403)||(13137272-13137318)
chr2 (357-403)||(38460583-38460629)
chr2 (217-278)||(7213135-7213195)
chr2 (310-403)||(15719044-15719131)
chr2 (217-278)||(37139156-37139216)
chr2 (357-408)||(25138688-25138740)
chr2 (325-372)||(35077192-35077240)
chr2 (325-372)||(35080450-35080498)
[»] scaffold0996 (1 HSPs)
scaffold0996 (310-403)||(1684-1775)
[»] scaffold0496 (1 HSPs)
scaffold0496 (338-402)||(10134-10198)
[»] scaffold1063 (1 HSPs)
scaffold1063 (310-403)||(2764-2853)
[»] scaffold0080 (1 HSPs)
scaffold0080 (310-403)||(27388-27477)
[»] scaffold0757 (1 HSPs)
scaffold0757 (319-403)||(5638-5718)
[»] scaffold0520 (1 HSPs)
scaffold0520 (357-403)||(1305-1351)
[»] scaffold0045 (1 HSPs)
scaffold0045 (357-403)||(90080-90126)
[»] scaffold0062 (1 HSPs)
scaffold0062 (310-403)||(67601-67688)
[»] scaffold2047 (1 HSPs)
scaffold2047 (325-368)||(570-614)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 281 - 531
Target Start/End: Complemental strand, 3604785 - 3604534
Alignment:
Q  281 cccatttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtattttt 380  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||| ||||||    
T  3604785 cccatttgttaaatcctaatcgtaattaaattgccgagttgagattgaaacaatctttatggagatgaacttataaattttattatttcgatgcattttt 3604686  T
Q  381 agtaaacttgttaaaaatctatcgatgtgtgtcaattgtggatgtgatttgaaacatatgacatgaatcaag-tatgcaatagaacatactctactatga 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  3604685 agtaaacttgttaaaaatctatcgatgtgtgtcaattgtggatgtgatttgaaacacatgacatgaatcaagttatccaatagaacatactctactatga 3604586  T
Q  480 cacatcaacatttttaaatagaatttactccctacgcctcacaattattgtc 531  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||    
T  3604585 cacatcaacatttttaaatagaatttactcccagcgtctcacaattattgtc 3604534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 3604960 - 3604770
Alignment:
Q  18 gggtggccttaataggcacatccatttctatcttttcaattgcagatgttgccatatttgtatcacccttaggaagagtaggaggaaaaataaacttgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3604960 gggtggccttaataggcacatccatttctatcttttcaattgcagatgttgccatatttgtatcacccttaggaagagtaggaggaaaaataaacttgta 3604861  T
Q  118 ctgagatttgtgctaatgttattggtattatatagagatttaagtaacatgttataataggattaattaatta-ccccatttgttaaatcc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  3604860 ctgagatttgtgctaatgttattggtattatatagagatttaagtaacatattataataggattaattaattacccccatttgttaaatcc 3604770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 281 - 403
Target Start/End: Complemental strand, 29613070 - 29612949
Alignment:
Q  281 cccatttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtattttt 380  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||| ||| || || || ||||||||||||| |||| |||| ||||||    
T  29613070 cccatttgttaaatcttaata-taattaaattgccaagttgagattgaaacaatccatgttgaaacaaatttataaattttatcactttgatgcattttt 29612972  T
Q  381 agtaaacttgttaaaaatctatc 403  Q
    | || ||||| ||||| ||||||    
T  29612971 aatacacttgctaaaagtctatc 29612949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 403
Target Start/End: Original strand, 14349235 - 14349355
Alignment:
Q  283 catttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttag 382  Q
    |||||| |||||||| |  ||||||||||||   |||||| || |||||||||  ||||||||| ||||||||||  |||||||||||||  ||||||||    
T  14349235 catttgataaatccttactgtaattaaattgttgagttgatatcgaaacaatcaatgtggagacaaacttataaaaattattacttcgatacatttttag 14349334  T
Q  383 taaacttgttaaaaatctatc 403  Q
    || ||||||||||| ||||||    
T  14349335 tacacttgttaaaagtctatc 14349355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 44008446 - 44008538
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||| || ||||||||| ||| |||  | |||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||    
T  44008446 ttgccaagtagaaattgaaacagtccatgtaaatacgaacttataaattttattactttgatatatttttagtacacttgttaaaagtctatc 44008538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 43254403 - 43254343
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  43254403 aacaagccaaaatgaaattatattacca-aaaacaatagcaatctcttagcaaaaggtgtgc 43254343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 587600 - 587672
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| || ||| |||||||||||||||||||||||||| | |||||||| || |||||||||||    
T  587600 attgaaacagtccatgcggatacgaacttataaattttattacttcgttatatttttaatacacttgttaaaa 587672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 626322 - 626250
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| || ||| |||||||||||||||||||||||||| | |||||||| || |||||||||||    
T  626322 attgaaacagtccatgcggatacgaacttataaattttattacttcgttatatttttaatacacttgttaaaa 626250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 41778830 - 41778739
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| ||| || ||||||||| |||||||  | |||||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||    
T  41778830 ttgccgagtagaaattgaaacagtccttgta-atacgaacttataaattttattacttcgatatatttttagtacagttgctaaaagtctatc 41778739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 12820734 - 12820648
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaactt-ataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| ||| || ||||||||| ||| |||||| |||||||| |||||||||||||||||||| ||||||||| | ||||| |||||    
T  12820734 ttgccgagtagaaattgaaacagtccatgtggatacgaactttataaattttattacttcgatatatttttagcacacttgctaaaa 12820648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 27805440 - 27805367
Alignment:
Q  324 attgaaacaatccttgtggagacgaa-cttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||||||| |||| ||||||| |||||||||||||||| || |||| |||||||||| ||||| |||||    
T  27805440 attgaaacaatccctgtgaagacgaatcttataaattttattattttgatgcatttttagtacacttgctaaaa 27805367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 33883205 - 33883115
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| |||||||||   ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  33883205 attgctaaattgagattaacacagtcctcgtggatacgaactta---attttattacttcgatgcatttttagtacacttgctaaaagtctatc 33883115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 13097183 - 13097267
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| ||| || ||||||| | ||| |||| | ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||    
T  13097183 ttgccgagtagaaattgaaatagtccctgtgaatacgaact-ataaattttattacttcgatatatttttagtacacttgctaaaa 13097267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 24793204 - 24793264
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| | || | ||| |||||| ||||||||||||||||    
T  24793204 aacaagccaaaatgaaattatattacc-ataagcgatatcaatctcttagcacaaggtgtgc 24793264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 5952402 - 5952450
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  5952402 ttgaaacagtccttgtggatacgaatcttataaattttattacttcgat 5952450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 45155096 - 45155039
Alignment:
Q  338 tgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaa 397  Q
    |||||| |||||||||||||||||||||||||||  || |||||||| ||||| ||||||    
T  45155096 tgtggatacgaacttataaattttattacttcga--tagttttagtacacttgctaaaaa 45155039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 5538582 - 5538536
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  5538582 attttattacttcgatacatttttagtacacttgctaaaaatctatc 5538536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 37681347 - 37681284
Alignment:
Q  338 tgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||| || ||||||||||||||||||||||||  |||| |||||| ||||| ||||| ||||||    
T  37681347 tgtggatacaaacttataaattttattacttcga--tattattagtacacttgctaaaagtctatc 37681284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 25231372 - 25231408
Alignment:
Q  336 cttgtggagacgaacttataaattttattacttcgat 372  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  25231372 cttgtggatacgaacttataaaatttattacttcgat 25231408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 43681697 - 43681653
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatcta 401  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  43681697 attttattacttcgatgcatttttagtacacttgctaaaagtcta 43681653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 346 - 227
Alignment:
Q  284 atttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagt 383  Q
    |||| ||||||||| ||  |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |    
T  346 attttttaaatccttattataattaaattaccgagttgagattgaaacaatctttgtggagacgaacttataaattttattacttcgatgcatttttaat 247  T
Q  384 aaacttgttaaaaatctatc 403  Q
    | ||||| ||||| ||||||    
T  246 acacttgctaaaattctatc 227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 22952784 - 22952907
Alignment:
Q  284 atttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagt 383  Q
    |||||||||||||| ||  ||||||||||| |||||| ||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||    
T  22952784 atttgttaaatccttattataattaaattgtcaagtttagattgaaacaatccatgtggaggcaaacttataaattttattacttcgatgcatttttagt 22952883  T
Q  384 aaacttgttaaaaatctatcgatg 407  Q
    | ||| |  |||| ||||||||||    
T  22952884 acactcgcaaaaagtctatcgatg 22952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 24423291 - 24423214
Alignment:
Q  319 ttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  24423291 ttgagattgaaacaattcatgtggagacgaacttataaattttattacttcaatgtatttttagtacacttgctaaaa 24423214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 30058032 - 30057921
Alignment:
Q  284 atttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagt 383  Q
    |||||||||||||||||  ||||||||||| | |||||||||||||||||||||  |||| |||| |||||||| |||| |||||||||| ||||||| |    
T  30058032 atttgttaaatcctaattataattaaattgtcgagttgagattgaaacaatcctcatggaaacgatcttataaa-tttactacttcgatgcatttttaat 30057934  T
Q  384 aaacttgttaaaa 396  Q
    | ||||| |||||    
T  30057933 acacttgctaaaa 30057921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 47106286 - 47106224
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  47106286 aacaagccaaaatgaaattatattaccaaaaa-caatagcaatctcttagcacaaggtgtgcat 47106224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 42565301 - 42565363
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  42565301 aacaagccaaaatgaaattatattacc-aaaaacgatagcaatctcttagcacaaggtgtgcat 42565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 22083287 - 22083195
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| ||| || ||||||||| ||| |||||| |||||||||||||||||||| ||||||| || |||||||| ||||| ||||| ||||||    
T  22083287 ttgccgagtagaaattgaaacagtccctgtggatacgaacttataaattttattgcttcgatataattttagtacacttgctaaaagtctatc 22083195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 31026176 - 31026117
Alignment:
Q  218 acaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  31026176 acaagccaaaatgaaattatattatcaaaaa-caatagcaatctcttagcacaaggtgtgc 31026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 23313335 - 23313256
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||| ||| |||||| | ||||||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||    
T  23313335 attgaaacagtccctgtggatatgaacttataaattttattatttcgatatatttttagtacacttgctaaaagtctatc 23313256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 26808608 - 26808519
Alignment:
Q  284 atttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatg 373  Q
    |||||||||||||| ||  ||||||||||| | ||| || ||||||||| ||  |||||| ||||||||||||| |||||||||||||||    
T  26808608 atttgttaaatccttattataattaaattgtcgagtagaaattgaaacagtctctgtggatacgaacttataaaatttattacttcgatg 26808519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 13554854 - 13554792
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||    
T  13554854 aacaaggcaaaatgaaattatattacca-aaaacaatagcaatctcttagtataaggtgtgcat 13554792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 46993693 - 46993753
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| |||| | |||||||||| || |||||||||||||    
T  46993693 aacaagccaaaatgaaattatattacc-aaaagcgatagcaatctcttcgcacaaggtgtgc 46993753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 11397911 - 11397821
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| |||||||||   ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  11397911 attgctaaattgagattaacacagtcctcgtggatacgaactta---attttattacttcgatgcatttttagtacacttgctaaaagtctatc 11397821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 5242021 - 5241930
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| ||| |||||| || ||||||||||||||||||||||||||   |||||||| ||||| ||||| ||||||    
T  5242021 attgctaaattgagattaacacagtccctgtggatacaaacttataaattttattacttcgatg--gttttagtacacttgataaaagtctatc 5241930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 19727938 - 19727998
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| ||||   |||||||||| || |||||||||||||    
T  19727938 aacaagccaaaatgaaattatattacc-aaaagtgatagcaatctcttcgcacaaggtgtgc 19727998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 10345440 - 10345529
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | |||||||| ||||| ||||||||||    ||||||||||||||  |||||||||| ||||| ||||| ||||||    
T  10345440 attgctaaattgagattaacacaatcctcgtggatacgaacttat----tttattacttcgatacatttttagtacacttgctaaaattctatc 10345529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 17731094 - 17731166
Alignment:
Q  320 tgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||| | ||| |||||||||| ||||||||||    ||||||||||||||| |||||||||| ||||| |||||    
T  17731094 tgagattaacacagtccttgtggatacgaacttat----tttattacttcgatgcatttttagtacacttgctaaaa 17731166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 4595816 - 4595770
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  4595816 attttattacttcgatgcatttttagtacacttgctaaaagtctatc 4595770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 22611542 - 22611496
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| ||||  ||||||||||||    
T  22611542 attttattacttcgatgcatttttagtacacttactaaaaatctatc 22611496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 43022187 - 43022127
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||| ||||||| ||||||||||||| | |||| |||||||||| |||||| |||||||||    
T  43022187 aacaaaccaaaataaaattatattacc-ataaacgatagcaatctcttagcataaggtgtgc 43022127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 1636771 - 1636723
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  1636771 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 1636723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 23108183 - 23108219
Alignment:
Q  348 aacttataaattttattacttcgatgtatttttagta 384  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  23108183 aacttataaattttattactttgatatatttttagta 23108219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 44672866 - 44672818
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  44672866 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 44672818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 9313617 - 9313545
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9313617 attgaaacagtccttgtggatacgaacttataaattttattacttcgatatatttttagtacacttgttaaaa 9313545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 16731616 - 16731695
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||    
T  16731616 attgaaacagtccctgtggatacgaacttataaattttattacttcgatatatttttagtacacttgctaaaagtctatc 16731695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 13085001 - 13085061
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13085001 aacaagccaaaatgaaattatattacc-aaaaacaatagcaatctcttagcacaaggtgtgc 13085061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 6284176 - 6284236
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  6284176 aacaagtcaaaatgaaattatattaccaaaa-acaatagcaatctcttagcacaaggtgtgc 6284236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 28118107 - 28118192
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| ||| || ||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||| || ||||| |||||    
T  28118107 ttgccgagtagaaattgaaacagtccctgtggatacgaacttataaattttattacttcgatatatttttaatacacttgctaaaa 28118192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 2773249 - 2773157
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| ||| || |||||||||||||  ||||| ||||||||||||||| ||||||||||||  |||||||||| ||||| ||||| ||||||    
T  2773249 ttgccgagtagaaattgaaacaatcccagtggatacgaacttataaattatattacttcgattcatttttagtacacttgctaaaagtctatc 2773157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 11183921 - 11183845
Alignment:
Q  314 ccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttg 390  Q
    |||||| || ||||||||| ||| |||||| | |||||||||||||||||||||||||| ||||||||||| |||||    
T  11183921 ccaagtagaaattgaaacagtccctgtggatatgaacttataaattttattacttcgatatatttttagtacacttg 11183845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 12980568 - 12980496
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||| || ||||||||||| ||||| |||||    
T  12980568 attgaaacagtccatgtggatacgaacttataaattttattacttcaatttatttttagtacacttgctaaaa 12980496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 12983455 - 12983383
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    |||||||||  || |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  12983455 attgaaacagcccctgtggatacgaacttataaattttattacttcgatttatttttagtacacttgctaaaa 12983383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 20527233 - 20527157
Alignment:
Q  327 gaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||    
T  20527233 gaaacagtccctgtggatacgaacttataaattttattacttcgatatatttgtagtacacttgctaaaagtctatc 20527157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 281 - 396
Target Start/End: Complemental strand, 34390315 - 34390200
Alignment:
Q  281 cccatttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtattttt 380  Q
    |||||||| |||||||| ||  |||||||||| | |  ||||||||||||||| |||||| ||||||||||||  ||| ||||| |||| ||| ||||||    
T  34390315 cccatttgataaatccttattataattaaatttctacattgagattgaaacaaaccttgtagagacgaacttaataatcttattgcttcaatgcattttt 34390216  T
Q  381 agtaaacttgttaaaa 396  Q
    |||| ||||| |||||    
T  34390215 agtatacttgctaaaa 34390200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 28107599 - 28107524
Alignment:
Q  319 ttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    |||||||| | ||||||| |||||| |||||||||||||||||||||||||||  || |||||||| |||||||||||    
T  28107599 ttgagattaacacaatccctgtggatacgaacttataaattttattacttcga--tagttttagtacacttgttaaaa 28107524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 7015239 - 7015179
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  7015239 aacaaaccaaaatgaaattatattacca-aaaacaatagcaatctcttagcacaagatgtgc 7015179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 6514272 - 6514359
Alignment:
Q  319 ttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatcgatgt 408  Q
    |||||||| | ||| ||||||| || |||||||||||||||||||||||||||  || |||||||| ||||| ||||| |||||| ||||    
T  6514272 ttgagattaacacagtccttgtagatacgaacttataaattttattacttcga--tagttttagtacacttgctaaaagtctatcaatgt 6514359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 20189240 - 20189182
Alignment:
Q  345 acgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||    
T  20189240 acgaacttataaattttattacttcgatatatttttaatacacttgctaaaagtctatc 20189182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 22146751 - 22146809
Alignment:
Q  345 acgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||    
T  22146751 acgaacttataaattttattacttcgatatatttttaatacacttgctaaaagtctatc 22146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 1373323 - 1373263
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||    
T  1373323 aacaagccaaaatgaaattatattacc-ataagcgatagcaatctcttagcacaaggtgtgc 1373263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 1381071 - 1381011
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||    
T  1381071 aacaagccaaaatgaaattatattacc-ataagcgatagcaatctcttagcacaaggtgtgc 1381011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 13005460 - 13005546
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaat 398  Q
    ||||| || |||||||| | |||| || |||||| |||||||||||||||||||||||||||  || |||||||| ||||| |||||||    
T  13005460 attgctaaattgagattaacacaacccatgtggatacgaacttataaattttattacttcga--tagttttagtacacttgctaaaaat 13005546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 404
Target Start/End: Complemental strand, 15578759 - 15578666
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatcg 404  Q
    ||||| ||| || ||||||| | ||| ||| || |||||||||||||||||||| ||||||| |||||||| || ||||| ||||| |||||||    
T  15578759 ttgccgagtagaaattgaaatagtccctgtagatacgaacttataaattttattccttcgatatatttttaatacacttgctaaaagtctatcg 15578666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 16883846 - 16883903
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtattttta 381  Q
    ||||||||| ||| || ||| |||||||||||||||||||||||||||| ||||||||    
T  16883846 attgaaacagtccctgcggatacgaacttataaattttattacttcgatatattttta 16883903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 5260101 - 5260139
Alignment:
Q  334 tccttgtggagacgaacttataaattttattacttcgat 372  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  5260101 tccttgtggatacgaacttataaattttattacttcgat 5260139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 28111651 - 28111576
Alignment:
Q  319 ttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    |||||||| | ||| ||| |||||| |||||||||||||||||||||||||||  || |||||||| ||||| |||||    
T  28111651 ttgagattaacacagtccatgtggatacgaacttataaattttattacttcga--tagttttagtacacttgctaaaa 28111576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 2846583 - 2846631
Alignment:
Q  320 tgagattgaaacaatccttgtggagacgaacttataaattttattactt 368  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||||||    
T  2846583 tgagattaacacaatccttgtggatacgaacgtataaattttattactt 2846631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 24605092 - 24605007
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| || ||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||| |||||    
T  24605092 ttgccaagtagaaattgaaacagtccttgtggatacgaacttatagattttattacttcgatatatttttagtacacttgctaaaa 24605007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 10353413 - 10353473
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10353413 aacaagccaaaatgaaattatattacc-aaaaacaatagcaatctcttagcacaaggtgtgc 10353473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 37615032 - 37615092
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  37615032 aacaagccaaaatgaaattatattacc-aaaaacaatagcaatctcttagcacaaggtgtgc 37615092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 7394702 - 7394630
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||||    
T  7394702 attgaaacagtccatgtggatacgaacttataaattttattacttcgatatacttttagtacacttgctaaaa 7394630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 56195793 - 56195883
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | |||||||| ||| | |||||||||   ||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  56195793 attgctaaattgagattaacacaatcctcgtgaatacgaactta---attttattacttcgatgcatttttagtacacttgctaaaaatctatc 56195883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 56199120 - 56199210
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| |||||||||   ||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  56199120 attgctaaattgagattaacacagtcctcgtggatacgaactta---attttattacttcgatgcatttttagtacacttgctaaaaatctatc 56199210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 2436969 - 2437019
Alignment:
Q  334 tccttgtggagacgaacttataaattttattacttcgatgtatttttagta 384  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||||    
T  2436969 tccttgtggatatgaacttataaattttattacttcgatatatttttagta 2437019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 10426552 - 10426493
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||||||||||||||||||||||||  |||| ||||||||||| |||||| |||||||||    
T  10426552 aacaagccaaaatgaaattatattacc--aaaataatagcaatctcttagcataaggtgtgc 10426493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 955280 - 955220
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| |||| | |||||||||| || |||||||||||||    
T  955280 aacaagccaaaatgaaattatattacc-aaaagcgatagcaatctcttcgcacaaggtgtgc 955220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 9993524 - 9993464
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||    
T  9993524 aacaaaccaaaatgaaattatattacc-aaaagcaatagcaatctcttagcacaagatgtgc 9993464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 42954179 - 42954119
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| | |||| ||| |||||| ||||||||||||||||    
T  42954179 aacaagccaaaatgaaattatattacc-ataaacgataacaatctcttagcacaaggtgtgc 42954119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 26703329 - 26703237
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||| || ||||||||  | | ||| || ||||| |||||||||||||||||| |||| |||||||||| ||||| ||||| ||||||    
T  26703329 ttgccaagtagaaattgaaacggttcctgtagatacgaagttataaattttattactttgatgcatttttagtatacttgctaaaagtctatc 26703237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 3797670 - 3797580
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| |||||||||   ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  3797670 attgctaaattgagattaacacagtcctcgtggatacgaactta---attttattacttcgatgcatttttagtacacttgctaaaagtctatc 3797580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 396
Target Start/End: Complemental strand, 4953890 - 4953780
Alignment:
Q  282 ccatttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtattttt- 380  Q
    |||||||||||||||| ||   |||||||||| | |||||| ||||||||||| |||||||||||||  ||     |||||| ||||||||| ||||||     
T  4953890 ccatttgttaaatccttattacaattaaattgacgagttgaaattgaaacaattcttgtggagacgatttt-----ttttatcacttcgatgcattttta 4953796  T
Q  381 agtaaacttgttaaaa 396  Q
    |||| |||||||||||    
T  4953795 agtatacttgttaaaa 4953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 19859328 - 19859267
Alignment:
Q  340 tggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||| |||||||||||||||||||||||||  | || |||||||| ||||||||||| ||||||    
T  19859328 tggatacgaacttataaattttattacttc--tatagttttagtacacttgttaaaagtctatc 19859267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 15811991 - 15811909
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaa 395  Q
    ||||| || |||||||| | ||| |||| ||||| |||||||||   ||||||||||||||||| |||||||||| ||||| ||||    
T  15811991 attgctaaattgagattaacacagtcctcgtggatacgaactta---attttattacttcgatgcatttttagtacacttgctaaa 15811909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 53094776 - 53094838
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgat 372  Q
    ||||| || |||||||| | ||| ||| |||||| ||||||||||||| ||||||||||||||    
T  53094776 attgctaaattgagattaacacagtccctgtggatacgaacttataaagtttattacttcgat 53094838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 19820981 - 19821063
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| || |||||||| | |||||||| ||||| ||||||||||    ||||||||||||||  |||||||||| ||||| |||||    
T  19820981 attgctaaattgagattaacacaatcctcgtggatacgaacttat----tttattacttcgatacatttttagtacacttgctaaaa 19821063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 5681736 - 5681776
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaa 397  Q
    ||||||||||||||||| |||||||||| ||||| ||||||    
T  5681736 attttattacttcgatgcatttttagtacacttgctaaaaa 5681776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 19827688 - 19827777
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | |||||||| ||||| ||||||||||    |||||||||||||   |||||||||| ||||| ||||| ||||||    
T  19827688 attgctaaattgagattaacacaatcctcgtggatacgaacttat----tttattacttcgagacatttttagtacacttgctaaaagtctatc 19827777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 54900053 - 54900101
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  54900053 ttgaaacagtccatgtggatacgaatcttataaattttattacttcgat 54900101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 7524 - 7596
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  7524 attgaaacagtccttgtggatacgaacttataaattttattacttcgatatatttttagtacacttgctaaaa 7596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 2733586 - 2733503
Alignment:
Q  279 atcccatttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaatttta 362  Q
    ||||||||||||||||||| ||  ||||||||||  |||||||||||||||| ||||  |||||||||||||||||||||||||    
T  2733586 atcccatttgttaaatccttattataattaaattttcaagttgagattgaaataatcactgtggagacgaacttataaatttta 2733503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 22456568 - 22456496
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  22456568 attgaaacagtccctgtggatacgaacttataaattttattacttcgatttatttttagtacacttgctaaaa 22456496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 49148068 - 49148133
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaactt 389  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  49148068 attgaaacagtccctgtggatacgaacttataaattttattacttcgatttatttttagtacactt 49148133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 8435406 - 8435478
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  8435406 attgaaacagtccatgtggatgcgaacttataaattttattacttcgatatatttttagtacacttgctaaaa 8435478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 20795132 - 20795191
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtg 277  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  20795132 aacaaggcaaaatgaaattatattaccaaaa-acaatagcaatctcttagcacaaggtgtg 20795191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 22448024 - 22447952
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| |||||| | |||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  22448024 attgaaacagtccctgtggatatgaacttataaattttattacttcgatttatttttagtacacttgctaaaa 22447952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 22453258 - 22453186
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||| |||||| | |||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  22453258 attgaaacagtccctgtggatatgaacttataaattttattacttcgatttatttttagtacacttgctaaaa 22453186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 39429742 - 39429804
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    |||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  39429742 aacaagtcaaaatgaaattatattaccaacaa-caatagcaatctcttagcacaaggtgtgcat 39429804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 17618946 - 17618858
Alignment:
Q  315 caagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || ||||||||| ||| |||| | | |||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||    
T  17618946 caagtagaaattgaaacagtccctgtgaatatgaacttataaattttattacttcgatatatttttagtacatttgctaaaagtctatc 17618858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 47642893 - 47642801
Alignment:
Q  303 taattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaa 395  Q
    |||||||||| ||||||||||||||| ||||| |  ||| ||| ||||||||||||| ||||||||| ||| || ||||| ||||||| ||||    
T  47642893 taattaaatttccaagttgagattgagacaattcacgtgaagatgaacttataaattgtattacttcaatgcatatttagcaaacttgctaaa 47642801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 34066515 - 34066570
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttt 379  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||    
T  34066515 attgaaacagtccctgtggatacgaacttataaattttattacttcgatatatttt 34066570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 49265640 - 49265578
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    |||||| |||||||||||||||||||||| || |||||||||||| |||| |||||||||||||    
T  49265640 aacaaggcaaaatgaaattatattaccaacaa-caatagcaatctcttagtacaaggtgtgcat 49265578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 6892943 - 6892883
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| |||| | |||||||||| || |||||||||||||    
T  6892943 aacaagccaaaatgaaattatattacc-aaaagcgatagcaatctcttcgcacaaggtgtgc 6892883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 3087554 - 3087500
Alignment:
Q  348 aacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||    
T  3087554 aacttataaattttattacttcgatata-ttttagtacacttgttaaaagtctatc 3087500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 23990195 - 23990132
Alignment:
Q  340 tggagacgaacttataaattttattacttcgatgta-tttttagtaaacttgttaaaaatctat 402  Q
    |||| |||||||||||||||| ||||||||||| || ||||||||| ||||| ||||| |||||    
T  23990195 tggatacgaacttataaatttgattacttcgatatattttttagtacacttgctaaaagtctat 23990132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 34732157 - 34732102
Alignment:
Q  348 aacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||||||||| |  |||||||||| ||||| ||||||| ||||    
T  34732157 aacttataaattttattacttcggttcatttttagtacacttgctaaaaatttatc 34732102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 21018269 - 21018223
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| || |||||||| ||||||    
T  21018269 attttattacttcgatgcatttttagtacacctgttaaaagtctatc 21018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 21110960 - 21110914
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  21110960 attttattacttcgatgcatttttagtacacttgctaaaagtctatc 21110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 17336881 - 17336922
Alignment:
Q  325 ttgaaacaatccttgtggagacgaacttataaattttattac 366  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  17336881 ttgaaacaatctctatggagacgaacttataaattttattac 17336922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 25662929 - 25662881
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  25662929 ttgaaacagtccatgtggatacgaatcttataaattttattacttcgat 25662881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 28138682 - 28138634
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  28138682 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 28138634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 28141932 - 28141884
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  28141932 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 28141884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 29643076 - 29642987
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| ||||||||||    ||||||||||| ||| |||||||||| ||||| ||||| ||||||    
T  29643076 attgctaaattgagattaacacagtcctcgtggatacgaacttat----tttattacttcaatgcatttttagtacacttgctaaaagtctatc 29642987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 50096950 - 50097016
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttg 390  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  50096950 attgaaacagtccctgtggatacgaacttataaattttattacttcgatatatttttagtacacttg 50097016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 9155082 - 9155167
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| ||| || ||||||||| ||| |||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| |||||    
T  9155082 ttgccgagtagaaattgaaacagtccctgtggatacgaacttataaattttattatttcgatttatttttagtacacttgctaaaa 9155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 26551851 - 26551932
Alignment:
Q  303 taattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagta 384  Q
    ||||||||||| | |||||||||||||||||||||| || |||  |||||||||||||||| |||| |||| ||||||||||    
T  26551851 taattaaattgtcgagttgagattgaaacaatccttatgaagaaaaacttataaattttatcactttgatgcatttttagta 26551932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 20198773 - 20198711
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||    
T  20198773 aacaagccaaaatgaaattatattacca-aaaataatagcaatctcttagaacaaggtgtgcat 20198711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 10867163 - 10867222
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  10867163 aacaagccaaaatgaaattatattacc--aaaacaatagcaatctctcagcacaaggtgtgc 10867222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 53946579 - 53946519
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  53946579 aacaaaccaaaatgaaattatattacca-aaaacaatagcaatctcttagcacaatgtgtgc 53946519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 14868474 - 14868414
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| |||| | |||||||||| || |||||||||||||    
T  14868474 aacaagccaaaatgaaattatattacc-aaaagcgatagcaatctcttcgcacaaggtgtgc 14868414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 24888639 - 24888579
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||| ||||||||||||||||||||| |||||||||||||| | |||| |||||||||||    
T  24888639 aacaagtcaaaatgaaattatattacca-aaaacaatagcaatttcttagtacaaggtgtgc 24888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 26273333 - 26273373
Alignment:
Q  328 aaacaatccttgtggagacgaacttataaattttattactt 368  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  26273333 aaacaatccttgtagagacgaacttataaattttattactt 26273373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 9158302 - 9158349
Alignment:
Q  349 acttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  9158302 acttataaattttattacttcgatttatttttagtacacttgctaaaa 9158349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 25260951 - 25261030
Alignment:
Q  317 agttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||| ||||| |||   ||||||| ||| |||||||||||||||||| |||| |||||||||| ||||| |||||    
T  25260951 agttgagatggaaactatctccgtggagatgaatttataaattttattactttgatgcatttttagtacacttgctaaaa 25261030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 16244278 - 16244324
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  16244278 attttattacttcgatgtatttttagtacacttgctaaaagtctatc 16244324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 27968701 - 27968760
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||   ||||||||||||||    
T  27968701 aacaagccaaaataaaattatattacc--aaaacaatagcaatctcccagcacaaggtgtgc 27968760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 30219798 - 30219752
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  30219798 attttattacttcgatgcatttttagtaaacttgctaaaagtctatc 30219752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 19194015 - 19194064
Alignment:
Q  324 attgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  19194015 attgaaacagtccttgtggatacgaatcttataaattttattacttcgat 19194064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 32287121 - 32287068
Alignment:
Q  348 aacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||||||||||  || |||||||| ||||||||||| ||||||    
T  32287121 aacttataaattttattacttcga--tagttttagtacacttgttaaaagtctatc 32287068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 10960161 - 10960223
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgat 372  Q
    ||||| ||||||||||| | ||| |||| ||||| |||||||||| | |||||||||||||||    
T  10960161 attgctaagttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgat 10960223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 10963668 - 10963730
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgat 372  Q
    ||||| ||||||||||| | ||| |||| ||||| |||||||||| | |||||||||||||||    
T  10963668 attgctaagttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgat 10963730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 10967177 - 10967239
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgat 372  Q
    ||||| ||||||||||| | ||| |||| ||||| |||||||||| | |||||||||||||||    
T  10967177 attgctaagttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgat 10967239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 27497232 - 27497284
Alignment:
Q  225 aaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||| ||||||||||||| ||||||||| |||||||| |||| |||||||||||    
T  27497232 aaaaagaaattatattac-aaaaaacaaaagcaatctcttagtacaaggtgtgc 27497284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 10557881 - 10557833
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  10557881 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 10557833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 281 - 390
Target Start/End: Original strand, 14169 - 14277
Alignment:
Q  281 cccatttgttaaatcctaatcgtaattaaattgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtattttt 380  Q
    ||||||||||||||| || |  |||||||||| | | ||||||||| ||||||||| || |||||| ||||||||||| |||||||||||||  ||||||    
T  14169 cccatttgttaaatcttatta-taattaaatttctacgttgagattaaaacaatccatgcggagacaaacttataaatcttattacttcgatacattttt 14267  T
Q  381 agtaaacttg 390  Q
    |||| |||||    
T  14268 agtatacttg 14277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 15005647 - 15005707
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  15005647 aacaagccaaaatgaaattttattaccaaaa-acaatagcaatctcttagcacaaggtgtgc 15005707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 17944895 - 17944980
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| ||| || ||||||||| ||  |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  17944895 ttgccgagtagaaattgaaacagtctctgtggatacgaacttataaattttattacttcgatatatttttagtacacttgctaaaa 17944980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 13916155 - 13916214
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||    
T  13916155 aacaagccaaaataaaattatattaccaaaa--caatagcaatctcttagcacaaggtgtgc 13916214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 36357026 - 36357099
Alignment:
Q  324 attgaaacaatccttgtggagacgaa-cttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||||||  ||| |||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||    
T  36357026 attgaaacggtccatgtggagacgaatcttataaatattattacttcgatgcatttttagtacacttgttaaaa 36357099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 402
Target Start/End: Complemental strand, 35432313 - 35432230
Alignment:
Q  324 attgaaacaatccttgtggagacgaacttataaatttta-----ttacttcgatgtatttttagtaaacttgttaaaaatctat 402  Q
    ||||||||| ||| |||||| ||||||||||||||||||     ||||||||||| ||||||| || ||||||||||| |||||    
T  35432313 attgaaacagtccctgtggatacgaacttataaattttaatttattacttcgatgcatttttaatacacttgttaaaagtctat 35432230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 18239334 - 18239276
Alignment:
Q  338 tgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    |||||| ||||||||||||||||||||||||||||  ||||||| || ||||| |||||    
T  18239334 tgtggatacgaacttataaattttattacttcgattcatttttaatacacttgctaaaa 18239276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 3199814 - 3199754
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||| ||||||||||||| |||  | |||||||||| ||||||||||||||||    
T  3199814 aacaagccaaaataaaattatattacc-aaaggcgatagcaatctcttagcacaaggtgtgc 3199754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 19514153 - 19514093
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| | || | ||| |||||| ||||||||||||||||    
T  19514153 aacaagccaaaatgaaattatattacc-ataagcgataacaatctcttagcacaaggtgtgc 19514093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 4099338 - 4099292
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  4099338 attttattacttcgatgcatttttagtacacttgctaaaagtctatc 4099292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 21335506 - 21335460
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||  |||||||||| ||||||||||| ||||||    
T  21335506 attttattacttcgatacatttttagtacacttgttaaaagtctatc 21335460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 8571384 - 8571444
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| | || | |||||||||| || ||| |||||||||    
T  8571384 aacaagccaaaatgaaattatattacc-ataagcgatagcaatctctttgcataaggtgtgc 8571444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 7271295 - 7271384
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| ||||||||||    ||||||||||||||  |||||||||| ||||| ||||| ||||||    
T  7271295 attgctaaattgagattaacacagtcctcgtggatacgaacttat----tttattacttcgatacatttttagtacacttgctaaaagtctatc 7271384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 22036134 - 22036182
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  22036134 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 22036182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 3119429 - 3119489
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  3119429 aacaagccaaaatgaaattatattacc-aaaaacaatagcaatctcttagcacaaagtgtgc 3119489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 30720049 - 30720134
Alignment:
Q  311 ttgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaa 396  Q
    ||||| ||| || |||||||||  || |||||| || ||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  30720049 ttgccgagtagaaattgaaacagcccctgtggatacaaacttataaattttattacttcgatatatttttagtacacttgctaaaa 30720134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 9669682 - 9669620
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgcat 280  Q
    |||||||||||||||||||||||||||| ||||||||| |||| | ||||||||| ||||||||    
T  9669682 aacaagccaaaatgaaattatattacca-aaaacaataacaatttcttagcacaaagtgtgcat 9669620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 11235143 - 11235083
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| || |||||||||||||    
T  11235143 aacaaggcaaaatgaaattatattacca-aaaacaatagtaatctcttcgcacaaggtgtgc 11235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 45457411 - 45457501
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| |||||||||   ||||||||||||||||| || ||||||| ||||| ||||||||||||    
T  45457411 attgctaaattgagattaacacagtcctcgtggatacgaactta---attttattacttcgatgcatatttagtacacttgctaaaaatctatc 45457501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 32244288 - 32244228
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||||||||| ||||||||||||| ||||   |||||||||| ||||||||||||||||    
T  32244288 aacaagccaaaataaaattatattacc-aaaagtgatagcaatctcttagcacaaggtgtgc 32244228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 13137147 - 13137236
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| ||||||||||    ||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  13137147 attgctaaattgagattaagacagtcctcgtggatacgaacttat----tttattatttcgatgcatttttagtacacttgctaaaaatctatc 13137236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 43723959 - 43724048
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| ||||||||||    |||||||||||||| ||||||||||| ||||| ||||| ||||||    
T  43723959 attgctaaattgagattaacacagtcctcgtggatacgaacttat----tttattacttcgatatatttttagtacacttgctaaaattctatc 43724048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 17199704 - 17199755
Alignment:
Q  351 ttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctat 402  Q
    ||||| |||||||||||||||| ||||||||||| || |||||||| |||||    
T  17199704 ttatacattttattacttcgatttatttttagtatacatgttaaaagtctat 17199755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 31427354 - 31427307
Alignment:
Q  356 aattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  31427354 aattttattacttcgatgcatttttagtacacttgctaaaagtctatc 31427307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 13137272 - 13137318
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  13137272 attttattatttcgatgcatttttagtacacttgctaaaaatctatc 13137318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 38460629 - 38460583
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||| ||||||||||||||||||||| ||||| ||||| ||||||    
T  38460629 attttactacttcgatgtatttttagtacacttgctaaaagtctatc 38460583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 7213195 - 7213135
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    |||||| |||||||||||||||||| | ||||| ||||||||||| |||| ||||| |||||    
T  7213195 aacaagtcaaaatgaaattatattatc-aaaaataatagcaatctcttagtacaagatgtgc 7213135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 15719131 - 15719044
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| | ||| |||| ||||| ||||||||    ||||||||||||| |  || |||||||| ||||| ||||||||||||    
T  15719131 attgccaagttgagattaacacagtcctcgtggatacgaactt----attttattacttcca--tagttttagtacacttggtaaaaatctatc 15719044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 37139156 - 37139216
Alignment:
Q  217 aacaagccaaaatgaaattatattaccaaaaaacaatagcaatcttttagcacaaggtgtgc 278  Q
    ||||||| ||||||||||||||||| ||||   | |||||||||| ||||||||||||||||    
T  37139156 aacaagctaaaatgaaattatattaacaaagg-cgatagcaatctcttagcacaaggtgtgc 37139216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 25138740 - 25138688
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaa-atctatcgatgt 408  Q
    |||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||    
T  25138740 attttattacttcgatatatttttagtacacttgctaaaatatctatcaatgt 25138688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 35077192 - 35077240
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  35077192 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 35077240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 35080450 - 35080498
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattacttcgat 372  Q
    |||||||| ||| |||||| ||||| |||||||||||||||||||||||    
T  35080450 ttgaaacagtccctgtggaaacgaatcttataaattttattacttcgat 35080498  T

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Target: scaffold0996 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 1775 - 1684
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||||||||| |||||||||||||||||||||||||||  || |||||||| ||||| ||||| ||||||    
T  1775 attgctaaattgagattaacacagtccttgtggatacgaacttataaattttattacttcga--tagttttagtacacttgctaaaattctatc 1684  T

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Target: scaffold0496 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 10198 - 10134
Alignment:
Q  338 tgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctat 402  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||  | ||||||||| |||||    
T  10198 tgtggagacgaatttataaattttattacttcgatgcatttttagtccatttgttaaaagtctat 10134  T

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Target: scaffold1063 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 2764 - 2853
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| ||||||||||    ||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  2764 attgctaaattgagattaacacagtcctcgtggatacgaacttat----tttattacttcgatgcatttttagtacacttgctaaaagtctatc 2853  T

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Target: scaffold0080 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 27388 - 27477
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||| || |||||||| | ||| |||| ||||| ||||||||||    ||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  27388 attgctaaattgagattaacacagtcctcgtggatacgaacttat----tttattacttcgatgcatttttagtacacttgctaaaagtctatc 27477  T

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Target: scaffold0757 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 5638 - 5718
Alignment:
Q  319 ttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    |||||||| ||||| |||| ||||| ||||||||||    ||||||||||||||| | |||||||| ||||| ||||| ||||||    
T  5638 ttgagattaaaacagtcctcgtggatacgaacttat----tttattacttcgatgcagttttagtacacttgctaaaagtctatc 5718  T

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Target: scaffold0520 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 1351 - 1305
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  1351 attttattacttcgatgcatttttagtacacttgctaaaagtctatc 1305  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 90080 - 90126
Alignment:
Q  357 attttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  90080 attttattacttcgatgcatttttagtacacttgctaaaagtctatc 90126  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 67688 - 67601
Alignment:
Q  310 attgccaagttgagattgaaacaatccttgtggagacgaacttataaattttattacttcgatgtatttttagtaaacttgttaaaaatctatc 403  Q
    ||||||||||||||||| | ||| |||| ||||| ||||||||    ||||||||||||| |  || |||||||| ||||| ||||||||||||    
T  67688 attgccaagttgagattaacacagtcctcgtggatacgaactt----attttattacttcca--tagttttagtacacttggtaaaaatctatc 67601  T

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Target: scaffold2047 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 614 - 570
Alignment:
Q  325 ttgaaacaatccttgtggagacgaa-cttataaattttattactt 368  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||    
T  614 ttgaaacaatccctgtggatacgaatcttataaattttattactt 570  T

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