View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_8 (Length: 495)
Name: NF13938_high_8
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 170 - 477
Target Start/End: Original strand, 36064796 - 36065099
Alignment:
| Q |
170 |
tcctaacgattaatgaccataatttcccactactcaatccgatcttgagatgttataaaattacaaataataatgtgaattgtttttgtatatattgtta |
269 |
Q |
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| T |
36064796 |
tcctaacgattaatgactataatttcccactactcaatccgatcttgagatgttataaaattacaaataataatgtgaattgtttttgtatatattgtta |
36064895 |
T |
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| Q |
270 |
attaaagcaggcgagccatacagaaaagggtggtgcaaatcccaatcaaggaacctcatggatcaaggctaaaaggagagagtaatacaccaccttcaga |
369 |
Q |
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| T |
36064896 |
attaaagcaggcgagccatacagaaaagggtggtgcaaatcccaatcaaggaacctcatggatcaaggctaaaaggagagagtaatacaccaccttcaga |
36064995 |
T |
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| Q |
370 |
ttcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccaggtatgtatgtatgtataaatataatctaatgtaatgtagcaag |
469 |
Q |
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| T |
36064996 |
ttcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccag----gtatgtatgtataaatataatctaatgtaatgtagcaag |
36065091 |
T |
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| Q |
470 |
caactagc |
477 |
Q |
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|||||||| |
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| T |
36065092 |
caactagc |
36065099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 36064600 - 36064763
Alignment:
| Q |
1 |
aaaattcaaaaacccacatactcaccaagaggaagacttgactgacatatctcaagattccactccttcttccacctcatttaacatcgatggctcagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36064600 |
aaaattcaaaaacccacatactcaccaagaggaagacttgactgacatatctcaagattccactccttcttccacctcatttaacatcgatggctcagtc |
36064699 |
T |
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| Q |
101 |
acttcccactcttcttcatcatctaagaaaaggttagtacactgtacacacacttatactaatta |
165 |
Q |
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| T |
36064700 |
acttcccactcttcttcatcatctaagaaaaggttagta-gcagtgcacacacttatactaatta |
36064763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 5190450 - 5190528
Alignment:
| Q |
352 |
taatacaccaccttcagattcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccaggtat |
430 |
Q |
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| T |
5190450 |
taatactccaccgtctgattcatgggcttggagaaagtatggtcagaaacccatcaaaggttccccttatccaaggtat |
5190528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 429
Target Start/End: Complemental strand, 12166382 - 12166315
Alignment:
| Q |
362 |
ccttcagattcatgggcatggagaaaatatggccagaaacccatcaaaggttcgccttatcccaggta |
429 |
Q |
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|||||||||| ||||| |||||||||||||| ||||| || || |||||||| |||||||| ||||| |
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| T |
12166382 |
ccttcagatttgtgggcttggagaaaatatggtcagaagcctattaaaggttcaccttatccaaggta |
12166315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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