View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_10 (Length: 489)
Name: NF13938_low_10
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 50 - 440
Target Start/End: Original strand, 10843356 - 10843747
Alignment:
| Q |
50 |
tccaaaaacagcttgcattttacaaaacaaaacaattagggttaataaggtttacctgttaaagcattgagaccattgaaacaagttttaaggaaacaag |
149 |
Q |
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| T |
10843356 |
tccaaaaacagcttgcattttacaaaacaaaacaactagggttaataaggtt-acctgttaaagcattgagaccattgaaacaagttttaaggaaagaag |
10843454 |
T |
|
| Q |
150 |
tggtaagaatattgtcgttgggaccgctaccagaaatttggtttccttcatgttctgttaaaagaggaacattcagagagatatcttcatcacacctctg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10843455 |
tggtaagaatattgtcgttgggaccgctaccagaaatttggtttccttcatgttctgttaaaagaggaacattcagagagatatcttcatcacacctctg |
10843554 |
T |
|
| Q |
250 |
ccacttatcaccttctccttccattgatattttcaaggaagaaatgagac--agattgnnnnnnngtttgttacttctcaagtttgtaaaaaataagaat |
347 |
Q |
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| T |
10843555 |
ccacttatcaccttctccttccattgatattttcaaggaagaaatgagacagagattgtttttttgtttgttacttctcaagtttgtaaaaaataagaat |
10843654 |
T |
|
| Q |
348 |
gtttctctttaataccaataaaatatacttccatgccatgcacgtgggttgagtatatatggaacttcaacatttataataaatatcgagttg |
440 |
Q |
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| T |
10843655 |
gtttctctttaataccaataaaatatacttccatgccatgcacgtgggttgagtatatatggaacttcaacatttataataaatatcgagttg |
10843747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 76 - 291
Target Start/End: Original strand, 2700824 - 2701035
Alignment:
| Q |
76 |
acaaaacaattagggttaataaggtttacctgttaaagcattgagaccattgaaacaagttttaaggaaacaagtggtaagaatattgtcgttgggaccg |
175 |
Q |
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||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||| | ||||| ||||| | |
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| T |
2700824 |
acaaaacaactaaagttaataaggtt-acctgataaagcattgagaccattgaaacaagttttaaggaatgatgtggt---gacattgttactgggattg |
2700919 |
T |
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| Q |
176 |
ctaccagaaatttggtttccttcatgttctgttaaaagaggaacattcagagagatatcttcatcacacctctgccacttatcaccttctccttccattg |
275 |
Q |
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| |||||||||||| |||||||||| |||| || | |||| |||||||| | ||||||| |||| |||||||||||||||||| |||||||||| |
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| T |
2700920 |
ttgccagaaatttggcttccttcatgctctgctattaagggaatattcagagcaacatcttcactacactgctgccacttatcaccttcaccttccattg |
2701019 |
T |
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| Q |
276 |
atattttcaaggaaga |
291 |
Q |
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||| ||||||| |||| |
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| T |
2701020 |
atagtttcaagaaaga |
2701035 |
T |
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