View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_18 (Length: 416)
Name: NF13938_low_18
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 8800993 - 8801349
Alignment:
| Q |
29 |
atacaagcaatgatgagtatatccttcttaaacaaatactccaactaaacaaac-accaaattgaaaagcatgcaagcaaacatcagccgattgaacaca |
127 |
Q |
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| T |
8800993 |
atacaagcaatgatgagtatatccttcgtaaacaaatactacaactaaacaaaccaccaaattgaaaaacatgcaagcaaacatcagccgattgaacaga |
8801092 |
T |
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| Q |
128 |
aaaaatctccaaccaatgcatatcagaaagccatgagctaccaaagatgattaactttctactttaattttgtgaattactattaattaactcaacaaag |
227 |
Q |
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| T |
8801093 |
aaaaatctccaac-------tatcagaaagccaagggctaccaaagatgattaactttctactttaattttgtgaatta---ttaattaactcaacaaag |
8801182 |
T |
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| Q |
228 |
ttttctctttta---aattgaaaccaatatgacgttgctaagttagatagcatgcatacaaataatcagtagtaattcgaaataatttactactgcagaa |
324 |
Q |
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| T |
8801183 |
ttttatcttttactaaattgaacccaatatgacgttgctatgttagctagcatgcata----taatcagtagtaattcgagataatttact---gcagaa |
8801275 |
T |
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| Q |
325 |
aaagctagtgctgtagccaagttaataaagctgtaaagtatgtgggacagtccgaatgtctcttcctctttttt |
398 |
Q |
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| T |
8801276 |
aaagctagtgctgtagctaagttaataaagctgtaaagtatgtgggacagtccgaatgtctcttcctctttttt |
8801349 |
T |
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