View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_24 (Length: 354)
Name: NF13938_low_24
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 160 - 348
Target Start/End: Original strand, 15597442 - 15597632
Alignment:
| Q |
160 |
ttgtttaccgtcaacttttgttgtaactacaaataggaaaataaatagaaacattgtataaataaacttaatgatagccatat--atcccctcttttcat |
257 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15597442 |
ttgtttaccgtcaactttggttgtaactgcaaataggaaaataaatagaaacattgtataaataaacttaatgatagccatatatatcccctcttttcat |
15597541 |
T |
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| Q |
258 |
gtaacacacaggataggttatttttcttgttgcataatagaacaagatttggtcattttatagtgggtaaaaatcctaatgaaatacgtat |
348 |
Q |
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| T |
15597542 |
gtaacacacaggataggttatttttcttgttgcataatagaacaagatttggtcattttatagtgggtaaaaatcctaatgaaatacgtat |
15597632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 160 - 351
Target Start/End: Original strand, 15601370 - 15601563
Alignment:
| Q |
160 |
ttgtttaccgtcaacttttgttgtaactacaaataggaaaataaatagaaacattgtataaataaacttaatgatagccatatat--cccctcttttcat |
257 |
Q |
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|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |
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| T |
15601370 |
ttgtttaccgtcaactttggttggaattacaaataggaaaataaatagaaacattgtataaatgaacttaatgatagccatatatttcccctctttttat |
15601469 |
T |
|
| Q |
258 |
gtaacacacaggataggttatttttcttgttgcataatagaacaagatttggtcattttatagtgggtaaaaatcctaatgaaatacgtatatt |
351 |
Q |
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| T |
15601470 |
gtaacacacaggacaggttatttttcttgttgcataatagaacaagatttggtcattttatagtgggtaaaaatcctaatgatatacgaatatt |
15601563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 160 - 351
Target Start/End: Original strand, 15610955 - 15611150
Alignment:
| Q |
160 |
ttgtttaccgtcaacttttgttgtaactacaaataggaaaataaatagaaacattgtataaataaacttaatgatagcc--atatatcccctcttttcat |
257 |
Q |
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|||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
15610955 |
ttgtttaccgtcaactttggttggaactacaaatagtaaaataaatagaaacattgtataaataaacttaatgatagccatatatatcccctctttttat |
15611054 |
T |
|
| Q |
258 |
gtaacacacaggataggttatttttctt--gttgcataatagaacaagatttggtcattttatagtgggtaaaaatcctaatgaaatacgtatatt |
351 |
Q |
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| T |
15611055 |
gtaacacacaggacaagttatttttcttgcgttacataatagaacaagatttggtcattttatagtgggtataaaacctaataaaatacgaatatt |
15611150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 15589192 - 15589377
Alignment:
| Q |
163 |
tttaccgtcaacttttgttgtaactacaaataggaaaataaatagaaacattgtataaataaacttaatgat---agccatatat--cccctcttttcat |
257 |
Q |
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|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||||| || |
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| T |
15589192 |
tttaccgtcaactttggttggaactacaaataggaaaataaatagaaacattgtgtaaataaatttaatgattgcagccatatatttcccctctttttat |
15589291 |
T |
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| Q |
258 |
gtaacacacaggataggttatttttcttgttgcataatagaacaagatttggtcattttatagtgggtaaaaatcctaatgaaata |
343 |
Q |
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| T |
15589292 |
gtaacagatagaacaggttatttttcttgttacataatagaacaagatttgatcactttatagtaggtaaaaatcctaataaaata |
15589377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 15597334 - 15597385
Alignment:
| Q |
52 |
taaatgctattatggaaaaaagaagaataaattagatatgttataacaagaag |
104 |
Q |
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| T |
15597334 |
taaatgctattatg-aaaaaagaagaataaattagatatgttataacaagaag |
15597385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 15597108 - 15597145
Alignment:
| Q |
18 |
gggagatgttgttcacagacgaaatcatgtattctaaa |
55 |
Q |
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| T |
15597108 |
gggagatgttgttcacagacgaaatcatgtattctaaa |
15597145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 23176383 - 23176423
Alignment:
| Q |
188 |
acaaataggaaaataaatagaaacattgtataaataaactt |
228 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| |
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| T |
23176383 |
acaaataggaaaagaaatagaaacattgcataaataaactt |
23176423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 23587640 - 23587680
Alignment:
| Q |
188 |
acaaataggaaaataaatagaaacattgtataaataaactt |
228 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| |
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| T |
23587640 |
acaaataggaaaagaaatagaaacattgcataaataaactt |
23587680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 23182564 - 23182628
Alignment:
| Q |
164 |
ttaccgtcaacttttgttgtaactacaaataggaaaataaatagaaacattgtataaataaactt |
228 |
Q |
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||||| ||||| ||||||||| | | |||||||| |||||||||||||| || || ||||||||| |
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| T |
23182564 |
ttaccttcaacatttgttgtagcaagaaataggacaataaatagaaacactgcattaataaactt |
23182628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 23593821 - 23593885
Alignment:
| Q |
164 |
ttaccgtcaacttttgttgtaactacaaataggaaaataaatagaaacattgtataaataaactt |
228 |
Q |
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||||| ||||| ||||||||| | | |||||||| |||||||||||||| || || ||||||||| |
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| T |
23593821 |
ttaccttcaacatttgttgtagcaagaaataggacaataaatagaaacactgcattaataaactt |
23593885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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