View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13938_low_25 (Length: 341)
Name: NF13938_low_25
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 43102163 - 43101836
Alignment:
| Q |
1 |
tgcactggcgtagaaatttaatatgtatgaacaatgggaagaagttgaaacctatacataagggcaataatgaggagaggatgaatgagtgatggttcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43102163 |
tgcactggcgtagcaatttaatatgtatgaacaatgggaagaagttgaaacctatacataagggcaataatgaggagaggatgaatgagtgatggttcaa |
43102064 |
T |
|
| Q |
101 |
tgatgctctacaggccaatggtctttattggctgaaacatgtcaactataacattattgaccacaacatgttgtctgcatttgtttagatgtagcatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43102063 |
tgatgctctacaggccaatggtctttattggctgaaacatgtcaactataacattattgaccacaacatgttgtctgcatttgtttagatgtagcatgag |
43101964 |
T |
|
| Q |
201 |
gagacttctagtttccatatttcaattggagagatgatagtgacattagatggtgtgtcatgtttaatgcatctcccccattgagggtcatctcacggac |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43101963 |
gagacttctaatttccatatttcaattggagagatgatagtgacattagatggtgtgtcatgtttaatgcatctcccccatcgagggtcatctcacggac |
43101864 |
T |
|
| Q |
301 |
cacaatgcttctctttctagacttgatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43101863 |
cacaatgcttctctttctagacttgatg |
43101836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 289
Target Start/End: Original strand, 23047402 - 23047533
Alignment:
| Q |
157 |
ttgaccacaacatgttgtctgcatttgtttagatgtagcatgaggagacttctagtttccatatttcaattggagagatgatagtgacattagatggtgt |
256 |
Q |
| |
|
||||||| ||| | |||||||| |||||| ||| | || ||| |||| ||||| |||| | |||| ||||| ||||||| ||||||||| | |||||| |
|
|
| T |
23047402 |
ttgaccataacctattgtctgcttttgttgagagatgacacgagaagacatctagcttccgtctttcgattggggagatgagagtgacatttgttggtgt |
23047501 |
T |
|
| Q |
257 |
gtcatgtttaatgcatctcccccattgagggtc |
289 |
Q |
| |
|
||||||| | ||||||| ||| ||||||||||| |
|
|
| T |
23047502 |
gtcatgtctgatgcatc-ccctcattgagggtc |
23047533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 43453283 - 43453163
Alignment:
| Q |
156 |
attgaccacaacatgttgtctgcatttgtttagatgtagcatgaggagacttctagtttccatatttcaattggagagatgatagtgacattagatggtg |
255 |
Q |
| |
|
|||||||||||| || | ||||||||||| ||| || ||||||||||| ||| || |||||| || | |||| ||||||| | ||||| | |||| || |
|
|
| T |
43453283 |
attgaccacaacttgatttctgcatttgtggagaggtggcatgaggagatttcaagcttccatcttccgtttggggagatgacaatgacacttgatgatg |
43453184 |
T |
|
| Q |
256 |
tgtcatgtttaatgcatctcc |
276 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
43453183 |
tgtcatgtttgttgcatctcc |
43453163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 42459222 - 42459142
Alignment:
| Q |
198 |
gaggagacttctagtttccatatttcaattggagagatgatagtgacattagatggtgtgtcatgtttaatgcatctcccc |
278 |
Q |
| |
|
||||||||||| || ||||||||| ||||| ||||||| ||||||| | |||| |||||||||||| |||| ||||||| |
|
|
| T |
42459222 |
gaggagacttcgagcttccatattccaattaaggagatgacagtgacacttgatgatgtgtcatgtttgatgcgtctcccc |
42459142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 9716725 - 9716659
Alignment:
| Q |
119 |
tggtctttattggctgaaacatgtcaactataacattattgaccacaacatgttgtctgcatttgtt |
185 |
Q |
| |
|
||||||||| | ||| || ||||| | ||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
9716725 |
tggtctttactagctcaagcatgttagctataacattaatgaccacaacgtattgtctgcatttgtt |
9716659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 14090479 - 14090399
Alignment:
| Q |
198 |
gaggagacttctagtttccatatttcaattggagagatgatagtgacattagatggtgtgtcatgtttaatgcatctcccc |
278 |
Q |
| |
|
||||||||||| |||||||| ||||| | || | ||||| ||||||| | |||| |||||||||||| ||||||||||| |
|
|
| T |
14090479 |
gaggagacttcgagtttccacctttcattaggggggatgacagtgacacttgatgatgtgtcatgtttgctgcatctcccc |
14090399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University