View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_27 (Length: 318)
Name: NF13938_low_27
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 30865335 - 30865625
Alignment:
| Q |
22 |
gcgatttaattgaatgcatgtgaaaaatgttttccaatgtcgatgcttaataattgaatctttaaccaagtgatttaattaagtggtttatgaggccctt |
121 |
Q |
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| T |
30865335 |
gcgatttaattgaatgcatgtgaaaaatgttttccaacgtcgatgcttactaattgaatcattaaccaagtgatttaattaagtggtttatgaggcccgt |
30865434 |
T |
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| Q |
122 |
acgacgaagtattcgaaagaatctaagtttgatttctacttgaaacaattattaatcaaattttacttacctctctaacaaatttcgagttactagtatc |
221 |
Q |
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| T |
30865435 |
atgacgaagtgttcgaaaaaatctaagtttgatttctatttgaaacaattattgatcaaattttacttacctctctaacaaattttgagttactagtatc |
30865534 |
T |
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| Q |
222 |
ccttttctctaggaattgaaaggttagcacaaccaccacgacaccaataaccaccgcaaaacatcacctccgtctttcaccatattcttcg |
312 |
Q |
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| T |
30865535 |
cctttactctagaaattgaaaggttaacacaaccaccacgacaccaataaccaccacaaaacatcaccaccgtctttcaccaccttcttcg |
30865625 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 36960426 - 36960483
Alignment:
| Q |
24 |
gatttaattgaatgcatgtg-aaaaatgttttccaatgtcgatgcttaataattgaat |
80 |
Q |
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||||| ||| |||||||||| ||||||||||| || ||||| |||||||||||||||| |
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| T |
36960426 |
gatttgattaaatgcatgtgtaaaaatgttttgcattgtcggtgcttaataattgaat |
36960483 |
T |
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