View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_low_30 (Length: 303)

Name: NF13938_low_30
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_low_30
NF13938_low_30
[»] chr1 (1 HSPs)
chr1 (1-291)||(41567227-41567520)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 41567227 - 41567520
Alignment:
Q  1 tcttctcttcccaccaccaccgccgcgcctttcatctctctc--gccactgtcgctcctctcactttccccgcccgccgccaccattccaccgcttgcaa 98  Q
    ||||||||||||||||||||| || |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41567227 tcttctcttcccaccaccaccaccacgcctttcgtctctctcacgccactgtcgctcctctcactttccccgcccgccgccaccattccaccgcttgcaa 41567326  T
Q  99 caacctccaaatctcaaccggcggtggagctgcttcgatatggcacgcgattactccttgcggcggcgacggattccgaaccggcggtgtgatgcttcat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41567327 caacctccaaatctcaaccggcggtggagctgcttcgatatggcacgcgattactccttgcggcggcgacggattccgaaccggcggtgtgatgcttcat 41567426  T
Q  199 catgaccacgaactcaaaggtgaaggatcgt-gaacgttgcttgggatgctcgtcctgctagatggcttcatcgttccgactccgcgtggcttc 291  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41567427 catgaccacgaactcaaaggtgaaggatcgtggaacgttgcttgggatgctcgtcctgctagatggcttcatcgttccgactccgcttggcttc 41567520  T

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