View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_low_31 (Length: 287)

Name: NF13938_low_31
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_low_31
NF13938_low_31
[»] chr3 (5 HSPs)
chr3 (1-278)||(32416911-32417191)
chr3 (18-56)||(1613912-1613950)
chr3 (12-61)||(29359213-29359262)
chr3 (12-60)||(11194786-11194834)
chr3 (15-55)||(45954105-45954145)
[»] chr1 (4 HSPs)
chr1 (18-61)||(46510624-46510667)
chr1 (15-54)||(23175834-23175873)
chr1 (12-61)||(28750103-28750152)
chr1 (14-50)||(43741174-43741210)
[»] chr2 (4 HSPs)
chr2 (15-61)||(11723571-11723617)
chr2 (15-54)||(39134521-39134560)
chr2 (15-55)||(8846919-8846959)
chr2 (18-54)||(16101278-16101314)
[»] chr7 (5 HSPs)
chr7 (12-61)||(8238685-8238734)
chr7 (15-61)||(40934496-40934542)
chr7 (20-61)||(38444464-38444505)
chr7 (12-61)||(47764610-47764659)
chr7 (12-60)||(43359572-43359620)
[»] chr6 (8 HSPs)
chr6 (15-55)||(10117928-10117968)
chr6 (18-61)||(31842514-31842557)
chr6 (15-61)||(6153799-6153845)
chr6 (12-60)||(7466452-7466501)
chr6 (18-55)||(13685536-13685573)
chr6 (15-60)||(32132033-32132078)
chr6 (15-55)||(7466384-7466424)
chr6 (12-60)||(32462170-32462218)
[»] chr8 (2 HSPs)
chr8 (12-50)||(33970650-33970688)
chr8 (15-55)||(33744259-33744299)
[»] chr5 (4 HSPs)
chr5 (12-50)||(3308611-3308649)
chr5 (15-60)||(34578354-34578399)
chr5 (12-60)||(28770625-28770673)
chr5 (15-55)||(36486767-36486807)
[»] scaffold0223 (1 HSPs)
scaffold0223 (18-55)||(28164-28201)
[»] scaffold0045 (1 HSPs)
scaffold0045 (15-55)||(22162-22202)
[»] chr4 (1 HSPs)
chr4 (15-55)||(32319550-32319590)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 32417191 - 32416911
Alignment:
Q  1 cattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaannnnnnnagtccctatnnnnnnnnttcatcagcattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||        |||||||||||||||    
T  32417191 cattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaatttttttagtccctataaaaaaaattcatcagcattatt 32417092  T
Q  101 aattataaatcgcaccatgttaagtagatcgatacactcaaataaataaatacaaacaagtctttagtttgtttgatttaaggaaactttcaagcatacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32417091 aattataaatcgcaccatgttaagtagatcgatacactcaaataaataaatacaaacaagtctttagtttgtttgatttaaggaaactttcaagcatacc 32416992  T
Q  201 ctattttaagaaatatgt---tattcttttatttcttgggcatttgaaattcagatgtatatcaaatgaacacatatgtta 278  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32416991 ctattttaagaaatatgttactattcttttatttcttgggcatttgaaattcagatgtatatcaaatgaacacatatgtta 32416911  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 1613950 - 1613912
Alignment:
Q  18 aaaataaaatcgcacattttagtccctgtaaaattttca 56  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  1613950 aaaataaaatcgcactttttagtacctgtaaaattttca 1613912  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 29359262 - 29359213
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||| |||||    
T  29359262 ccttacaaaataaaatcacactttttagtccctataaaattttccatcaa 29359213  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 11194834 - 11194786
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatca 60  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||| ||||    
T  11194834 ccttacaaaataaaatcacactttttagtccctataaaattttccatca 11194786  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 45954145 - 45954105
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||| ||||||||||||| ||||||||    
T  45954145 tataaaataaaatcacactttttagtccctgtgaaattttc 45954105  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 46510667 - 46510624
Alignment:
Q  18 aaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  46510667 aaaataaaatcgcactttttagtccctgtaaaattttccatcaa 46510624  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 23175873 - 23175834
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaatttt 54  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  23175873 tataaaataaaatcgtactttttagtccctgtaaaatttt 23175834  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 28750103 - 28750152
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||| |||||    
T  28750103 ccttacaaaataaaatcacactttttagtccctataaaattttccatcaa 28750152  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 43741174 - 43741210
Alignment:
Q  14 ttataaaataaaatcgcacattttagtccctgtaaaa 50  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  43741174 ttataaaataaaatcacactttttagtccctgtaaaa 43741210  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 11723617 - 11723571
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||||    
T  11723617 tataaaataaaatcacactttttagtccctgtaaaattttccatcaa 11723571  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 39134521 - 39134560
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaatttt 54  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  39134521 tataaaataaaatcacacattttagtccctataaaatttt 39134560  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 8846959 - 8846919
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  8846959 tataaaataaaatcacactttttagtccctgtaacattttc 8846919  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 16101314 - 16101278
Alignment:
Q  18 aaaataaaatcgcacattttagtccctgtaaaatttt 54  Q
    |||||||||||||||  ||||||||||||||||||||    
T  16101314 aaaataaaatcgcactatttagtccctgtaaaatttt 16101278  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 8238685 - 8238734
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||| |||||    
T  8238685 ccttataaaataaaatcacactttttagtccctataaaattttccatcaa 8238734  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 40934496 - 40934542
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    |||||||||||||| ||| ||||||||||| |||||||||| |||||    
T  40934496 tataaaataaaatcacactttttagtccctataaaattttccatcaa 40934542  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 38444464 - 38444505
Alignment:
Q  20 aataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  38444464 aataaaatcacactttttagtccctgtaaaattttccatcaa 38444505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 47764659 - 47764610
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||| |||||    
T  47764659 ccttacaaaataaaatcacactttttagtccctataaaattttccatcaa 47764610  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 43359572 - 43359620
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatca 60  Q
    ||||| ||||||||||||||||||||||| | |||| ||||||| ||||    
T  43359572 ccttacaaaataaaatcgcacattttagttcatgtataattttccatca 43359620  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 10117928 - 10117968
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  10117928 tataaaataaaatcgcactttttagtccttgtaaaattttc 10117968  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 31842514 - 31842557
Alignment:
Q  18 aaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||    
T  31842514 aaaataaaatcgcactttttagtccctataaaattttctatcaa 31842557  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 6153799 - 6153845
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 61  Q
    |||||||||||||||||| ||||||||| | |||||||||| |||||    
T  6153799 tataaaataaaatcgcactttttagtccttataaaattttccatcaa 6153845  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 7466501 - 7466452
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgt-aaaattttcaatca 60  Q
    ||||||||||||||||| ||| ||||||||||| | ||||||||||||||    
T  7466501 ccttataaaataaaatcacactttttagtccctataaaaattttcaatca 7466452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 13685536 - 13685573
Alignment:
Q  18 aaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  13685536 aaaataaaatcacactttttagtccctgtaaaattttc 13685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 32132033 - 32132078
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttcaatca 60  Q
    ||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  32132033 tataaaataaaatcgcactatttagtctctgtaaaattttccatca 32132078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 7466384 - 7466424
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  7466384 tataaaataaaatcacactttttagtccctgtaacattttc 7466424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 32462170 - 32462218
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatca 60  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||| ||||    
T  32462170 ccttacaaaataaaatcacacattttagtccctataaaatgttccatca 32462218  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 33970650 - 33970688
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaa 50  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  33970650 ccttataaaataaaatcgcactttttagtccttgtaaaa 33970688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 33744259 - 33744299
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||||||||||||||||| | ||||||    
T  33744259 tataaaataaaatcacacattttagtccctgtgacattttc 33744299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 3308649 - 3308611
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaa 50  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  3308649 ccttagaaaataaaatcgcacattttagtccatgtaaaa 3308611  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 34578354 - 34578399
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttcaatca 60  Q
    |||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  34578354 tataaaataaaatcacactttttagtccctataaaattttccatca 34578399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 28770625 - 28770673
Alignment:
Q  12 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatca 60  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||| ||||    
T  28770625 ccttacaaaataaaatcacactttttagtccctataaaattttccatca 28770673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 36486807 - 36486767
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||| ||||||||||||| ||||||||    
T  36486807 tataaaataaaatcacactttttagtccctgtgaaattttc 36486767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 28164 - 28201
Alignment:
Q  18 aaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  28164 aaaataaaattgcactttttagtccctgtaaaattttc 28201  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 22202 - 22162
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  22202 tataaaataaaatcacactttttagtccctgtaacattttc 22162  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 32319550 - 32319590
Alignment:
Q  15 tataaaataaaatcgcacattttagtccctgtaaaattttc 55  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  32319550 tataaaataaaatcacactttttagtccctataaaattttc 32319590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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