View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_33 (Length: 276)
Name: NF13938_low_33
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 27568297 - 27568039
Alignment:
| Q |
1 |
agttgattctaccatctagaattaaaagttattaccactcatataatggtcattcaaggccattaagcctgaggccattccacaactataactcccctga |
100 |
Q |
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| T |
27568297 |
agttgattctaccatctagaattaaaagttattaccactcatataatggtcattcaaggccattaagcctgaggccattccacaactataactcccctga |
27568198 |
T |
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| Q |
101 |
cctatggaccacttaatagtgagtttttataactaatcaatttgaaaaaattgatgtaatactgcattctcccacttggtccataagatctaactattgt |
200 |
Q |
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| T |
27568197 |
cctatggaccacttaatagtgagtttttataactaatcaatttgaaaaaattgatgtaatactgcattctcccacttggtccataagatctaactattgt |
27568098 |
T |
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| Q |
201 |
cctaaatgagtcatcaaataagttccttaataaacaagaatatgaaccatagtgatttt |
259 |
Q |
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| T |
27568097 |
cctaaatgagtcatcaaataagttccttaataaacaagaatatgaaccatagtgatttt |
27568039 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 28811322 - 28811261
Alignment:
| Q |
165 |
cattctcccacttggtccataagatctaactattgtcctaaatgagtcatcaaataagttcc |
226 |
Q |
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| T |
28811322 |
cattatcccacttggtccataggatctaattattggcctaaacgagtcatcaaataacttcc |
28811261 |
T |
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