View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_34 (Length: 275)
Name: NF13938_low_34
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 5255761 - 5255951
Alignment:
| Q |
25 |
agatgtttcagtaataattcaaaactgagtactaatagaattagagtcacatgccaaaaactagatataacatggaaggtttgtaacttaaattaacatc |
124 |
Q |
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| T |
5255761 |
agatgtttcaataataattcaaaactgagtactaatagaattagagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatc |
5255860 |
T |
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| Q |
125 |
tctataggattaca-aaacttaacatggataaaatgaagaaatttcagccaaaagtggaaaacgattgttgcctatataaaggtatgcagg |
214 |
Q |
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| T |
5255861 |
cctataggattacataaacttagcatggataaaatctagaaacttcagccaaaaatggaaaacaattgttgcctatacaaaggtatgcagg |
5255951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 5180430 - 5180637
Alignment:
| Q |
25 |
agatgtttcagtaataattcaaaactgagtactaatagaattagagtcacatgccaaaaactagatataacatggaaggtttgtaacttaaattaacatc |
124 |
Q |
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| T |
5180430 |
agatgtttcaataataattcata-ctgagtactaatagagttagagtcacatgcaaaaaactagatatatcacggaaggtttgtaacttaaattaacatc |
5180528 |
T |
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| Q |
125 |
tctataggattac-aaaacttaacatggataaaatgaagaaatttcagccaaaagtggaaaacgattgttgcctatataaaggtatgcaggcaccataag |
223 |
Q |
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| T |
5180529 |
tctataggattacaaaaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgttgcctatacaaaggtatacaggcaccataag |
5180628 |
T |
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| Q |
224 |
aattggttt |
232 |
Q |
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| T |
5180629 |
aattggttt |
5180637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 5282872 - 5283101
Alignment:
| Q |
25 |
agatgtttcagtaataattcaaaactgagtactaatagaattagagtcacatgccaaaaactagatataacatggaaggtttgtaacttaaattaacatc |
124 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||| |
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| T |
5282872 |
agatgtttcgataataattcaaaactgagtactaacagaattagagtcacatgccaaaaactagatataaaataggaggtttgtaacttcaattaacatc |
5282971 |
T |
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| Q |
125 |
tctataggattac-aaaacttaacatggataaaatgaagaaatttcagccaaaagtggaaaacga-ttgttgcctatataaaggtatgcaggcaccataa |
222 |
Q |
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|||| || ||||| |||||||| ||| |||| ||| ||||| ||||||||||| | | || | |||||||||||| | | ||||||||||| |
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| T |
5282972 |
tctagagtattacaaaaacttagcattgatacaatctagaaacttcagccaaaaaagagatacaacttgttgcctatacaca------taggcaccataa |
5283065 |
T |
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| Q |
223 |
gaattggtttttacccaaccattgttttgccatttt |
258 |
Q |
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| T |
5283066 |
gaattggtttttgcccaaccattgtcttgccatttt |
5283101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 5351880 - 5351832
Alignment:
| Q |
145 |
aacatggataaaatgaagaaatttcagccaaaagtggaaaacgattgtt |
193 |
Q |
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| T |
5351880 |
aacatggataaaatcaagaaactacagccaaaaatggaaaacaattgtt |
5351832 |
T |
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