View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_36 (Length: 270)
Name: NF13938_low_36
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 33343257 - 33343504
Alignment:
| Q |
5 |
agcacagacacggacactaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctat |
104 |
Q |
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| T |
33343257 |
agcacagacacggacactaataataacttgtaataaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctat |
33343356 |
T |
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| Q |
105 |
gctggcactcattgaagcaggacaggtataatgtagcatattgtgacaagttaaacaaactaagctcaacgccaattatatatagatttagaacataata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33343357 |
gctggcactcattgaagcaggacaggtataatgtagcatattatgacaagttaaacaaactaagctcaacgccaattatatatagaactagaacataata |
33343456 |
T |
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| Q |
205 |
tataataaataaactcgatattcattattttacggtataggccgaaag |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33343457 |
tataataaataaactcgatattcattattttacggtataggccgaaag |
33343504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 35123635 - 35123398
Alignment:
| Q |
11 |
gacacggacactaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctatgctggc |
110 |
Q |
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| T |
35123635 |
gacacggacactaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctaatgtagtgaacactgcatgggctatgctggc |
35123536 |
T |
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| Q |
111 |
actcattgaagcaggacaggtataatgtagcatattgtgacaagttaaacaaactaagctcaacgccaattatatatagatttagaacataatatataat |
210 |
Q |
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| T |
35123535 |
actcattgaagcaggacaggtataatgtagcatattatgacaagttaaacaaactaagctcaacgccaattatagatagaattagaacata----ataat |
35123440 |
T |
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| Q |
211 |
aaataaactcgatattcattattttacggtataggccgaaag |
252 |
Q |
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| T |
35123439 |
aaataaactcgatattcattattttacggtataggccgaaag |
35123398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 22508271 - 22508395
Alignment:
| Q |
19 |
cactaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctatgctggcactcattg |
118 |
Q |
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||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| || |||| |
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| T |
22508271 |
cactaataataacaggcaaaaaattaacaggtatacacaaacctggaaggaaacaagtctcatgtagtaaacactgcatgggctatgatgggtcttattg |
22508370 |
T |
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| Q |
119 |
aagcaggacaggtataatgtagcat |
143 |
Q |
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||| ||| ||||||| || |||||| |
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| T |
22508371 |
aaggaggccaggtattatatagcat |
22508395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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