View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_39 (Length: 259)
Name: NF13938_low_39
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 28183884 - 28184106
Alignment:
| Q |
19 |
aattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcggcattcactaatgcatgatccacaagcacttgtctca |
118 |
Q |
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| T |
28183884 |
aattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcggtattcactaatgcatgatccacaagcacttgtctca |
28183983 |
T |
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| Q |
119 |
acttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccctgtcgacaactttgagcaaatctttctcgcaaaatct |
218 |
Q |
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| T |
28183984 |
acttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccctgtcgacaactttgagcaaatctttctcgcaaaatct |
28184083 |
T |
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| Q |
219 |
tgaaggatgaagttctccattga |
241 |
Q |
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| T |
28184084 |
tgaaggatgaagttctccattga |
28184106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 40945529 - 40945315
Alignment:
| Q |
25 |
tcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcggcattcactaatgcatgatccacaagcacttgtctcaactttt |
124 |
Q |
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| T |
40945529 |
tcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattcttctcactctctccattaactaatgcatgatctaccaacacttgcctgagttttt |
40945430 |
T |
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| Q |
125 |
gcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaagg |
224 |
Q |
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| T |
40945429 |
gactcaatgggtatgtagcactacaaggatcatcaatataagcaaatacatgctctctatcaaccactttcaataagtctttttcacaaaatcttgaagg |
40945330 |
T |
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| Q |
225 |
atgaagttctccatt |
239 |
Q |
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| T |
40945329 |
atgaagttctccatt |
40945315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 40959494 - 40959280
Alignment:
| Q |
25 |
tcctcaaatgttgcaatcttttggaagattgatgtgttcgaattcttctctccttcggcattcactaatgcatgatccacaagcacttgtctcaactttt |
124 |
Q |
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|||||||| |||||||||||||| |||||||| |||||| |||||||||| | || |||| |||||||||||||| || | |||||| || | |||| |
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| T |
40959494 |
tcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattcttctcactctctccattaactaatgcatgatctaccaacacttgcctgagttttt |
40959395 |
T |
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| Q |
125 |
gcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaacacatactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaagg |
224 |
Q |
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| T |
40959394 |
gactcaatgggtatgtagcactacaaggatcatcaatataagcaaatacatgctctctatcaaccactttcaataagtctttttcacataatcttgaagg |
40959295 |
T |
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| Q |
225 |
atgaagttctccatt |
239 |
Q |
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|||||||||||||| |
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| T |
40959294 |
ttgaagttctccatt |
40959280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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