View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_4 (Length: 580)
Name: NF13938_low_4
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 32259445 - 32258872
Alignment:
| Q |
1 |
agtttgagagaggacgacaataacgatgatttggaacaatgttgccggaagagtgaaatcaaatggattatctccagaaaaaatgccataagagccaaca |
100 |
Q |
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| T |
32259445 |
agtttgagagaggacgacaataatgatgatttggaacaatgttgccggaagagtgaaatcgaatggattatctccagaaaaaatgccataagagccaaca |
32259346 |
T |
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| Q |
101 |
tttctatcattttttacacaaattttcaacaccccctgggaattaaatgaaagtgagacatttccgttgcctcgtaaggtctcctccattgatagatcaa |
200 |
Q |
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| T |
32259345 |
tttctatcattttttacacaaattttcaacaccccctgggaattaaatgaaagtgagacatttccgttgcctcgtaaggtctcctccattgatagatcaa |
32259246 |
T |
|
| Q |
201 |
tatcaaaccaattaattaaatgtttgcttggatttgcaatgcgaccatatgaataacatagttaatttaccatcgtgtttccaaacacattaaatgacga |
300 |
Q |
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| T |
32259245 |
tatcaaaccaattaattaaatgtgtgcttggatttgtgatgcgaccatatgaataacatagttaatttaccatcgtgtttccaaacacattaaatgacga |
32259146 |
T |
|
| Q |
301 |
ttgtgaataactaatgtggttcactcctgtgtttgtgttgcagc-------------aaaacacaaacacaggggaacaaaaaattaagccctagtagca |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
32259145 |
ttgtgaataactaatgtggttcactcctgtgtttgtgttgctgcgtttgtgttgcagcaaacacaaacataggggaacaaaaaattaagccc---tagca |
32259049 |
T |
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| Q |
388 |
gaaaggnnnnnnnntggaggagacagggatgaaagggttttatatatatacaagaaaaatagaaaggtggaggttaagaatcaataatactaagctatg- |
486 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32259048 |
gaaaggaaaaaaaatggaggagacagggatgaaagggttttatatatatacaagaaaaatagaaaggtggaggttaagaatcaataatactaagctatga |
32258949 |
T |
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| Q |
487 |
-atagacacgcgtttggtatttttgtcaaaaagatttaaattacaacggggacactaaagtattagccactcataca |
562 |
Q |
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| T |
32258948 |
tatagacacgcgtttggtatttttgtcaaaaagatttaaattacaacggggacactaaagtattagccactcataca |
32258872 |
T |
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