View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_40 (Length: 254)
Name: NF13938_low_40
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 2571652 - 2571450
Alignment:
| Q |
1 |
aaggtggaggagattgagctaggagtaataagggtgctaagaggatgaaaaggagaagggaaagtgaaggtgacatgnnnnnnnggaagtataatgaaag |
100 |
Q |
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| T |
2571652 |
aaggtggaggagattgagctaggagtaataagggtgctaagaggatgaaaaggagaagggaaagtgaaggtgacatgtttttttggaagtttaatgaaag |
2571553 |
T |
|
| Q |
101 |
gtggtttgagtatgtgttattttgcttgtgggatgtgtttaggaataatggtagtactaggaatttataggcacatagacgaagttgttgagataaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571552 |
gtggtttgagtatgtgttattttgcttgtgggatgtgtttaggaataatggtagtactaggaatttataggcacatagacgaagttgttgagataaataa |
2571453 |
T |
|
| Q |
201 |
ata |
203 |
Q |
| |
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||| |
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| T |
2571452 |
ata |
2571450 |
T |
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