View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_low_41 (Length: 250)

Name: NF13938_low_41
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_low_41
NF13938_low_41
[»] chr1 (5 HSPs)
chr1 (15-138)||(28394872-28394995)
chr1 (182-233)||(28394989-28395040)
chr1 (131-220)||(17993968-17994057)
chr1 (161-233)||(2987998-2988070)
chr1 (161-233)||(4651909-4651981)
[»] chr7 (3 HSPs)
chr7 (15-231)||(9349841-9350055)
chr7 (118-175)||(12481067-12481124)
chr7 (161-230)||(46133155-46133224)
[»] chr6 (4 HSPs)
chr6 (15-94)||(9224196-9224275)
chr6 (108-194)||(21266275-21266361)
chr6 (15-78)||(6946909-6946972)
chr6 (108-194)||(21265148-21265234)
[»] chr3 (2 HSPs)
chr3 (161-233)||(30935268-30935340)
chr3 (109-233)||(1652713-1652837)
[»] chr8 (2 HSPs)
chr8 (112-233)||(32945534-32945655)
chr8 (15-93)||(30235855-30235936)
[»] chr5 (3 HSPs)
chr5 (57-230)||(31721810-31721986)
chr5 (108-233)||(39024267-39024393)
chr5 (109-172)||(31742357-31742420)
[»] chr2 (5 HSPs)
chr2 (161-233)||(31902293-31902365)
chr2 (111-186)||(29044684-29044760)
chr2 (161-232)||(915332-915403)
chr2 (160-233)||(12793609-12793682)
chr2 (161-233)||(18681195-18681267)
[»] chr4 (1 HSPs)
chr4 (161-230)||(43373973-43374042)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 28394872 - 28394995
Alignment:
Q  15 accaacaaagacatcattgcaattaacccccataagggctaaacccaccaaaataaacaccccctaaaactgactcctaaacagccaaacaccgaaaaac 114  Q
    ||||| |||||||||  ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  28394872 accaataaagacatccctgcgattaacccacataagggttaaacccaccaaaataaacaccccctaaaactgactcctaaacaaccaaccaccgaaaaac 28394971  T
Q  115 gatatccataacaccgatcgtcac 138  Q
    ||||||||||||||| ||| ||||    
T  28394972 gatatccataacaccaatcatcac 28394995  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 28394989 - 28395040
Alignment:
Q  182 tcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    |||||||||||||| || ||||| |||||||||| |||||||||||||||||    
T  28394989 tcatcaccaaaacatagccaaattcgaagaactccttttctaaagatcattc 28395040  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 17993968 - 17994057
Alignment:
Q  131 atcgtcactactcaatccaaaataatacatttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcatttt 220  Q
    ||||||||| ||||  |||||| || ||  |||||| ||  |||||||||||||||||||| |  ||| || ||||||||||||||||||    
T  17993968 atcgtcactgctcaccccaaaagaacacccttgtaatagggaacccaatcctcatcaccaacatcgagccacatccgaagaactcatttt 17994057  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 2987998 - 2988070
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    |||||||||| ||||   ||||||||||||| || ||| || ||||||||||||| ||  |||||||||||||    
T  2987998 ttgtaaaagagaaccatgtcctcatcaccaacaccgagccacatccgaagaactccttccctaaagatcattc 2988070  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 4651981 - 4651909
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    |||||||||| |||| | ||| ||||||||| |  ||| || ||||||||||||| || ||||||||||||||    
T  4651981 ttgtaaaagagaaccaagtccccatcaccaacaatgagccacatccgaagaactccttctctaaagatcattc 4651909  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 9350055 - 9349841
Alignment:
Q  15 accaacaaagacatcattgcaattaacccccataagggctaaacccaccaaaataaaca-ccccctaaaactgactcctaaac-agccaaacaccgaaaa 112  Q
    ||||||||||||| |  |||||| ||||||||||||| | | ||||||||||||||||| |||||||||    ||||||| ||   |||| |||   |||    
T  9350055 accaacaaagacacccctgcaatcaacccccataaggacaacacccaccaaaataaacatccccctaaa----actcctatacttaccaaccactagaaa 9349960  T
Q  113 acgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaa 212  Q
    |||| |||||||||||   ||| |||||||||  |||||| || ||  |||||||||| ||| |||| ||||||||||| || ||| || ||||||||||    
T  9349959 acgacatccataacactcgtcgccactactcaccccaaaagaacacccttgtaaaagagaacacaatactcatcaccaacaccgagccacatccgaagaa 9349860  T
Q  213 ctcattttctaaagatcat 231  Q
    ||  || |||||| |||||    
T  9349859 cttcttctctaaatatcat 9349841  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 12481124 - 12481067
Alignment:
Q  118 atccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaaacc 175  Q
    |||||||||||| ||||||||||||||  |||||| || || ||||||||||||||||    
T  12481124 atccataacacccatcgtcactactcaccccaaaagaacacctttgtaaaagaaaacc 12481067  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 46133155 - 46133224
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatca 230  Q
    |||||||||| |||||| || |||||||||| || |||||| |||| |||||||| || |||||||||||    
T  46133155 ttgtaaaagagaacccagtcatcatcaccaacaccgagtcacatccaaagaactctttatctaaagatca 46133224  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 9224275 - 9224196
Alignment:
Q  15 accaacaaagacatcattgcaattaacccccataagggctaaacccaccaaaataaaca-ccccctaaaactgactcctaa 94  Q
    |||||||||||||||  ||| || |||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  9224275 accaacaaagacatccctgcgatcaacccc-ataagggataaacccatcaaaataaacatccccctaaaactgactcctaa 9224196  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 21266361 - 21266275
Alignment:
Q  108 gaaaaacgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaaacccaatcctcatcaccaaaac 194  Q
    ||||||||| ||||| |||| | ||||||||||||||  |||||  || ||  |||||||||||||| ||||||||| |||||||||    
T  21266361 gaaaaacgacatccagaacaaccatcgtcactactcaccccaaaggaacaccgttgtaaaagaaaactcaatcctcaacaccaaaac 21266275  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 6946909 - 6946972
Alignment:
Q  15 accaacaaagacatcattgcaattaacccccataagggctaaacccaccaaaataaacaccccc 78  Q
    ||||||||||||| | |||| || ||| ||||||||| | ||||||||||||||||||| ||||    
T  6946909 accaacaaagacacccttgcgatcaacacccataaggacaaaacccaccaaaataaacatcccc 6946972  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 21265234 - 21265148
Alignment:
Q  108 gaaaaacgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaaacccaatcctcatcaccaaaac 194  Q
    ||||||||| |||||| ||||| ||||||||||||||  |||||  || ||  |||||||||||||| ||| ||||| || ||||||    
T  21265234 gaaaaacgacatccatgacacccatcgtcactactcatcccaaaggaacaccgttgtaaaagaaaactcaaccctcaacatcaaaac 21265148  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 30935268 - 30935340
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    |||||||||| ||| || ||||||||||||| || ||| || ||||||||||||| |||||||||||||||||    
T  30935268 ttgtaaaagagaactcagtcctcatcaccaacaccgagccacatccgaagaactccttttctaaagatcattc 30935340  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 1652713 - 1652837
Alignment:
Q  109 aaaaacgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccga 208  Q
    |||||||| || ||||||||  ||||||||||||||   ||||| || ||  ||| ||||||  | ||| |||| |||||||| || ||| ||||| |||    
T  1652713 aaaaacgacattcataacactcatcgtcactactcacctcaaaagaacacccttgaaaaagaggaaccattccttatcaccaacaccgagccaaattcga 1652812  T
Q  209 agaactcattttctaaagatcattc 233  Q
     |||||| |||||||||||||||||    
T  1652813 ggaactccttttctaaagatcattc 1652837  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 32945534 - 32945655
Alignment:
Q  112 aacgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaaga 211  Q
    ||||| |||||||||||  |||| |||||||||   ||||| || || ||||||||| | || ||| || |||||||||| || |||||| ||| |||||    
T  32945534 aacgacatccataacactcatcgccactactcacctcaaaagaacacttttgtaaaaaagaaaccagtcatcatcaccaacaccgagtcacatctgaaga 32945633  T
Q  212 actcattttctaaagatcattc 233  Q
    |||  |||||||||||||||||    
T  32945634 acttcttttctaaagatcattc 32945655  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 30235855 - 30235936
Alignment:
Q  15 accaacaaagacatcattgcaattaacccccataagggctaaacccaccaaaataaa---caccccctaaaactgactccta 93  Q
    ||||||||||||| | |||| || ||| |||| |||| | | |||||||||||||||   ||||||||||||||||||||||    
T  30235855 accaacaaagacacccttgcgatcaacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgactccta 30235936  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 31721986 - 31721810
Alignment:
Q  57 acccaccaaaataaacacc-ccctaaaactgactcctaaac-agccaaacaccg-aaaaacgatatccataacaccgatcgtcactactcaatccaaaat 153  Q
    ||||||||||||||||| | |||||||||||||||||| ||   |||| ||| | |||||||| |||||||||||   ||| |||||||||   |||||     
T  31721986 acccaccaaaataaacatcaccctaaaactgactcctatacttaccaaccactgaaaaaacgacatccataacactcgtcgccactactcacctcaaaaa 31721887  T
Q  154 aatacatttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatca 230  Q
    || ||  |||||||||| ||| || ||||| ||||||| |  ||| || |||| ||||||||||| |||||||||||    
T  31721886 aacacccttgtaaaagagaactcagtcctcgtcaccaacatcgagccacatccaaagaactcattctctaaagatca 31721810  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 39024267 - 39024393
Alignment:
Q  108 gaaaaacgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaa-aacccaatcctcatcaccaaaacagagtcaaatcc 206  Q
    |||||||||||||||||||||  ||||||||||||||  | |||| || ||  |||||||||||  ||||| |||||||||||||| |  |  || |||     
T  39024267 gaaaaacgatatccataacactcatcgtcactactcaccctaaaagaacacccttgtaaaagaagcacccagtcctcatcaccaaatctaaaccacatcg 39024366  T
Q  207 gaagaactcattttctaaagatcattc 233  Q
    |||| |||| ||||||| |||||||||    
T  39024367 gaaggactccttttctacagatcattc 39024393  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 31742420 - 31742357
Alignment:
Q  109 aaaaacgatatccataacaccgatcgtcactactcaatccaaaataatacatttgtaaaagaaa 172  Q
    ||||||||||||||||||||| |||| |||||||||  |||||| || ||  ||||||||||||    
T  31742420 aaaaacgatatccataacacccatcgccactactcaccccaaaagaacacccttgtaaaagaaa 31742357  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 31902293 - 31902365
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    |||||||||| |||| | |||||| |||||| || |||||| ||||||||||||| || ||||||||||||||    
T  31902293 ttgtaaaagagaaccaagtcctcaacaccaacactgagtcacatccgaagaactccttctctaaagatcattc 31902365  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 29044684 - 29044760
Alignment:
Q  111 aaacgatatccataacaccgatcgtcactactca-atccaaaataatacatttgtaaaagaaaacccaatcctcatc 186  Q
    |||||| |||||||||||| ||||||||||||||  ||||||| || ||  |||||| |||||||||| ||||||||    
T  29044684 aaacgacatccataacacccatcgtcactactcacctccaaaagaacacccttgtaacagaaaacccagtcctcatc 29044760  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 915332 - 915403
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcatt 232  Q
    |||||| ||| |||||||||||||||||||| || |||  | ||||||||||||| |||||| || ||||||    
T  915332 ttgtaatagagaacccaatcctcatcaccaacactgagcaacatccgaagaactccttttcttaaaatcatt 915403  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 12793609 - 12793682
Alignment:
Q  160 tttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    ||||||||||| |||  | | ||||||||||| || ||| || ||||||||||||| || ||||||||||||||    
T  12793609 tttgtaaaagagaacttacttctcatcaccaacaccgagccacatccgaagaactccttctctaaagatcattc 12793682  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 18681267 - 18681195
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatcattc 233  Q
    |||||||||| |||| | ||||||||||||| |  ||| || ||||||||| ||| || ||||||||||||||    
T  18681267 ttgtaaaagagaacctagtcctcatcaccaacattgagccacatccgaagagctccttctctaaagatcattc 18681195  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 43373973 - 43374042
Alignment:
Q  161 ttgtaaaagaaaacccaatcctcatcaccaaaacagagtcaaatccgaagaactcattttctaaagatca 230  Q
    |||||||||| || | | || |||||||||| || ||||||  || ||||||||||||||||||||||||    
T  43373973 ttgtaaaagagaaacaagtcatcatcaccaacaccgagtcacctctgaagaactcattttctaaagatca 43374042  T

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