View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_43 (Length: 237)
Name: NF13938_low_43
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 53807066 - 53807140
Alignment:
| Q |
1 |
ttcacattgttttgtatagattcccttccatctgttccattcagttgttaaattcattcttctctcataattcaa |
75 |
Q |
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| T |
53807066 |
ttcacattgttttgtatagattcccttccatctgttccattcagttgttaaattcattcttctctcataattcaa |
53807140 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 53807207 - 53807297
Alignment:
| Q |
137 |
aaagaaaaacatactcctttatgtcgtgtttaaattttaatgt-----aggatatagtctaattttctttgttgttgttaattatactttt |
222 |
Q |
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| T |
53807207 |
aaagaaaaacatactcctttatgtcgtgtttaaattttaatgtagtggagtatatattataattttatttgttgttgttaattatactttt |
53807297 |
T |
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