View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_5 (Length: 576)
Name: NF13938_low_5
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 219662 - 219122
Alignment:
| Q |
19 |
taatctcgatccaatgactgcctgcctacatactgactactgctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatag |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219662 |
taatctcgatccaatgactgcctgcctacataccgactactgctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatag |
219563 |
T |
|
| Q |
119 |
ctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219562 |
ctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattagg |
219463 |
T |
|
| Q |
219 |
ttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219462 |
ttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatca |
219363 |
T |
|
| Q |
319 |
ttagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219362 |
ttagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaag |
219263 |
T |
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| Q |
419 |
aatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaataacatgtctatgaccatcataatcatcatagtttatatgcatcacatggctatt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219262 |
aatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaataacatgtctatgaccatcataatcatcatagtttatatgcatcacatggctatt |
219163 |
T |
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| Q |
519 |
ttttgaaagctcttttgatacgtccctataaagggtacctc |
559 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
219162 |
ttttgaaagctcttttgatacgtccctataaagggtacctc |
219122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 184 - 509
Target Start/End: Original strand, 31651709 - 31652031
Alignment:
| Q |
184 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
283 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
|
| Q |
284 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
383 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctatt |
31651908 |
T |
|
| Q |
384 |
aaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaataacatgtctatgaccatca |
483 |
Q |
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||||||||| |||||| |||| || |||||||||||||||||||| | ||||||||| |||| |||||| || | ||||||||||||||||| |
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| T |
31651909 |
aaccaaaat---gtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgaccatca |
31652005 |
T |
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| Q |
484 |
taatcatcatagtttatatgcatcac |
509 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
31652006 |
taatcatcatagttaatatgcatcac |
31652031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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