View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13938_low_7 (Length: 551)

Name: NF13938_low_7
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13938_low_7
NF13938_low_7
[»] chr7 (10 HSPs)
chr7 (34-516)||(39584317-39584801)
chr7 (113-492)||(39578561-39578954)
chr7 (118-216)||(39593371-39593466)
chr7 (340-416)||(39344478-39344554)
chr7 (323-416)||(39333209-39333302)
chr7 (128-177)||(39359313-39359362)
chr7 (339-416)||(39552421-39552498)
chr7 (323-416)||(39569241-39569334)
chr7 (127-159)||(39344771-39344803)
chr7 (352-416)||(39543209-39543273)
[»] chr4 (1 HSPs)
chr4 (26-60)||(54733354-54733388)
[»] chr6 (1 HSPs)
chr6 (18-62)||(20599462-20599506)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 34 - 516
Target Start/End: Original strand, 39584317 - 39584801
Alignment:
Q  34 ctaccaattgagttatacttacgggaccttagttctgtcattctaatgatacatatcatatatgcttggaatacatgaccattgttacctgccaggcttt 133  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39584317 ctaccaattgagttatacttacgggaccttagtcctgtctttctaatgatacatatcatatatgcttggaatacatgatcattgttacctgccaggcttt 39584416  T
Q  134 attat--tccaataacatccttgagaatgttcacatgttgtcttcttcttcttcttagtatatagttcagtggaacctttgaaatcccgaaaaaagaaaa 231  Q
    |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39584417 attatattccactaacatccttgagaatgttcacatgttgtcttcttcttcttcttagtatatagttcagtggaacctttgaaatcccgaaaaaagaaaa 39584516  T
Q  232 gggaattagtatattagattttctccatcaatgatatatgttattattactaagtactaacctctaccaaatcaagagcgtaattagtaagggtaggcga 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39584517 gggaattagtatattagattttctccatcaatgatatatgttattattactaagtactaacctctaccaaatcaagagcgtaattagtaagggtaggcaa 39584616  T
Q  332 agctctttttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctgggatgaaatgaaatg 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39584617 agctctttttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctgggatgaaatgaaatg 39584716  T
Q  432 catgcgaggtgaaaatgaaaacgttagcgcatctttattatgcaggagaaatcaacaataaaaagacttaaatgtatttttagtc 516  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  39584717 catgtgagttgaaaatgaaaacgttagcgcatctttatgatgcaggagaaatcaacaataaaaagacttaaatgcatttttagtc 39584801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 113 - 492
Target Start/End: Original strand, 39578561 - 39578954
Alignment:
Q  113 cattgttacctgccaggctttattattccaataacatccttgagaatgttcacatgttgtcttcttcttcttcttagtatatagttcagtggaacctttg 212  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| |||||||||||||||   ||||||||||||| |||| ||||||    
T  39578561 cattgttacctgccaggctttattattccactaatatcctttagaatattcacatgctgtcttcttcttctt---agtatatagttcaatggagcctttg 39578657  T
Q  213 aaatcccgaaaaaagaaaagggaattagtatattagattttctccatcaatgatatatgttatta-----------------ttactaagtactaacctc 295  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |                 ||| ||  |||| |||||    
T  39578658 aaatccagaaaaaagaaaagggaattagtatattagagtttctccatcaatgatatatgctataaactgttggtgttcaatgttattat-tactcacctc 39578756  T
Q  296 taccaaatcaagagcgtaattagtaagggtaggcgaagctctttttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgta 395  Q
    ||||| ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  39578757 taccatatcaagaacgtaattagtgagggtaggcaaagctctttttcctacgtgaacttctgcctcgatattcaagtgctcaaatcggacttcgattgta 39578856  T
Q  396 ggaagattaattccaactctgggatgaaatgaaatgcatgcgaggtgaaaatgaaaacgttagcgc-atctttattatgcaggagaaatcaacaataa 492  Q
    ||||||||||||||||||||| ||||  || |||| ||||| |||||||| || |||| |||| || |||||||| ||| |||||||| |||||||||    
T  39578857 ggaagattaattccaactctgagatgtcataaaatacatgcaaggtgaaagtggaaacattagtgcaatctttatgatgtaggagaaaacaacaataa 39578954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 39593371 - 39593466
Alignment:
Q  118 ttacctgccaggctttattattccaataacatccttgagaatgttcacatgttgtcttcttcttcttcttagtatatagttcagtggaacctttgaaat 216  Q
    ||||||||||||||||||||||||| |||||||||  ||||| |||||||||||   ||||||||||||||| ||| |||||| |||| ||||||||||    
T  39593371 ttacctgccaggctttattattccactaacatcctgaagaatattcacatgttg---tcttcttcttcttagaatagagttcaatggagcctttgaaat 39593466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 39344554 - 39344478
Alignment:
Q  340 ttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctg 416  Q
    ||||||| ||| ||||||||||||| ||||| ||||  ||||| || || || |||||||||| |||||||||||||    
T  39344554 ttcctacatgagcttctgcttcgatattcaaatgctcgaatcgaacctctatggtaggaagatcaattccaactctg 39344478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 416
Target Start/End: Complemental strand, 39333302 - 39333209
Alignment:
Q  323 ggtaggcgaagctctttttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctg 416  Q
    ||||||| ||| |||  |||||||  || |||||||||| || || | |||||  ||||| ||||| ||||||||||||| |||||||||||||    
T  39333302 ggtaggcaaagatctgcttcctacacgagcttctgcttcaatattgaggtgctcgaatcgaacttctattgtaggaagatcaattccaactctg 39333209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 39359362 - 39359313
Alignment:
Q  128 ggctttattattccaataacatccttgagaatgttcacatgttgtcttct 177  Q
    ||||||||||||||| |||||||||||||||| || | ||||||| ||||    
T  39359362 ggctttattattccactaacatccttgagaatatttagatgttgttttct 39359313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 39552421 - 39552498
Alignment:
Q  339 tttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctg 416  Q
    |||||||| ||| ||||||||||||| ||||||  ||  ||||| || || ||||||||||||| |||||| ||||||    
T  39552421 tttcctacatgagcttctgcttcgatattcaagccctcgaatcgaacctctattgtaggaagatcaattcctactctg 39552498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 416
Target Start/End: Original strand, 39569241 - 39569334
Alignment:
Q  323 ggtaggcgaagctctttttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctg 416  Q
    ||||||| ||| |||  |||||||  || ||||||||||||| |||| ||| |  ||||| ||||| ||||||||||||| || ||||||||||    
T  39569241 ggtaggcaaagatctgcttcctacacgagcttctgcttcgatattcaggtgttcgaatcgaacttctattgtaggaagatcaactccaactctg 39569334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 39344803 - 39344771
Alignment:
Q  127 aggctttattattccaataacatccttgagaat 159  Q
    |||||||||||||||| ||||||||||||||||    
T  39344803 aggctttattattccactaacatccttgagaat 39344771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 39543209 - 39543273
Alignment:
Q  352 cttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctg 416  Q
    ||||||||||||| |||| |||||  ||||| || || || |||||||||| |||||||||||||    
T  39543209 cttctgcttcgatattcaggtgctcgaatcgaacctctatcgtaggaagatcaattccaactctg 39543273  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 54733354 - 54733388
Alignment:
Q  26 cctggtagctaccaattgagttatacttacgggac 60  Q
    ||||||||||||||| |||||||||||||||||||    
T  54733354 cctggtagctaccaactgagttatacttacgggac 54733388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 20599462 - 20599506
Alignment:
Q  18 ataatgtccctggtagctaccaattgagttatacttacgggacct 62  Q
    ||||| ||||||||||||||||| |||| || |||||||||||||    
T  20599462 ataatatccctggtagctaccaactgagctacacttacgggacct 20599506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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