View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_low_8 (Length: 533)
Name: NF13938_low_8
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 5e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 225 - 397
Target Start/End: Complemental strand, 29999925 - 29999751
Alignment:
| Q |
225 |
gactttacattaccaaggtatg-aagtattaataaatgcctaataatcatccaatcaaatttaacaagattagcatagacaagtaaa-tgctaatctatg |
322 |
Q |
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| T |
29999925 |
gactttacattaccaaggtatgtaagtattaataaatgcctaataatcatccaatcaaatttaacaagattaacatagacaagtaaaatgctaatctatg |
29999826 |
T |
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| Q |
323 |
ttcctactagttcctccctactatactacacttccattgttagcaaagattcctctaaaatgttccattttctct |
397 |
Q |
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| T |
29999825 |
ttcctactagttcctccctactatactacacttccattgttagcaaagattcctctaaaatgttccattttctct |
29999751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 30000149 - 29999983
Alignment:
| Q |
1 |
tcttatttgcaagattataatttaggagaaagcaaagatcacttatttgcaaggactcgagatcttcaatgtgcaagattgttttgtagagttaacttgc |
100 |
Q |
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| T |
30000149 |
tcttatttgcaagattataatttaggagaaagcaaagatctcttatttgcaaggactcgagatcgtcaatgtgcaagattgttttgtagagttaacttgc |
30000050 |
T |
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| Q |
101 |
acttaaaaatttatgacaaaccttaaaaagcaaattttgtattcttatgaagttgtgatgccccaac |
167 |
Q |
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| T |
30000049 |
acttcaaaatttatgacaaaccttaaaaagcaaattttgtattcttatgaagttgtgatgccccaac |
29999983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 464 - 514
Target Start/End: Complemental strand, 29999684 - 29999634
Alignment:
| Q |
464 |
taacttatcatcactgctacaaaacaaatcagctaccaccagcagctgtag |
514 |
Q |
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| T |
29999684 |
taacttatcatcactgctacaaaacaaatcagctaccaccagcagctgtag |
29999634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 30000176 - 30000137
Alignment:
| Q |
14 |
attataatttaggagaaagcaaagatcacttatttgcaag |
53 |
Q |
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| T |
30000176 |
attataatttaggagaaagcaaagatctcttatttgcaag |
30000137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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