View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13939_high_1 (Length: 333)
Name: NF13939_high_1
Description: NF13939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13939_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 44717145 - 44716845
Alignment:
| Q |
12 |
tattcttaacacagacgaactccactattttggatatttgacttagtttgaggttgcagttttgctctggatggaaaatcttgcattttgtcatgagttc |
111 |
Q |
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| T |
44717145 |
tattcttaacgcagacgaactccactattttggatatttgacttagtttgaggttgcagttttgctctggatggaaaatcttgcattttgtcatgagttc |
44717046 |
T |
|
| Q |
112 |
cgtccatactcactatagtgacactgtttgttgatttattggtaatagagttgcaccgagtacttgatcttaggcttaatctcctctggtaaacatgttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44717045 |
cgtccatactcactatagtgacactgtttgttgatttattggtaatagagttgcaccgagtacttgatcttaggcttaatctcctctggtacacatgttt |
44716946 |
T |
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| Q |
212 |
atgtgaaattagtttagtatactcaggtatccaaaagtggggaaaatttgtttcttaggtttattagaataacataagcatagaattcatagagagtggt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44716945 |
atgtgaaattagtttagtatactcaggtatccaaaagt--ggaaaatttgtttcttaggtttattagaataacataagcatagaattcatagagagtggt |
44716848 |
T |
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| Q |
312 |
tga |
314 |
Q |
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||| |
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| T |
44716847 |
tga |
44716845 |
T |
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