View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1393_high_1 (Length: 601)

Name: NF1393_high_1
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1393_high_1
NF1393_high_1
[»] chr6 (10 HSPs)
chr6 (85-573)||(532759-533247)
chr6 (7-76)||(1550803-1550872)
chr6 (16-76)||(21548311-21548371)
chr6 (13-75)||(6004432-6004494)
chr6 (13-75)||(6007962-6008024)
chr6 (13-75)||(24378241-24378303)
chr6 (23-76)||(31297774-31297828)
chr6 (17-75)||(23066669-23066728)
chr6 (13-76)||(26010335-26010398)
chr6 (43-75)||(9564834-9564866)
[»] chr3 (7 HSPs)
chr3 (7-75)||(20823098-20823166)
chr3 (7-75)||(36708349-36708417)
chr3 (7-75)||(15484391-15484459)
chr3 (7-76)||(17605428-17605497)
chr3 (13-75)||(42676052-42676114)
chr3 (7-76)||(18369564-18369633)
chr3 (7-76)||(45683638-45683707)
[»] chr4 (5 HSPs)
chr4 (7-76)||(55223114-55223183)
chr4 (13-75)||(26693392-26693453)
chr4 (7-75)||(50451544-50451612)
chr4 (44-76)||(46639635-46639667)
chr4 (13-75)||(37318206-37318268)
[»] chr1 (3 HSPs)
chr1 (13-75)||(43510404-43510466)
chr1 (13-75)||(34854254-34854316)
chr1 (24-75)||(43669954-43670005)
[»] chr2 (6 HSPs)
chr2 (7-76)||(16212648-16212717)
chr2 (7-75)||(16084172-16084240)
chr2 (13-76)||(36069566-36069630)
chr2 (7-75)||(37642962-37643030)
chr2 (37-75)||(3952770-3952808)
chr2 (7-76)||(28401158-28401227)
[»] chr7 (9 HSPs)
chr7 (15-75)||(18670634-18670694)
chr7 (13-76)||(34458772-34458835)
chr7 (7-76)||(15765503-15765572)
chr7 (7-76)||(25185789-25185858)
chr7 (4-75)||(18766874-18766945)
chr7 (16-76)||(41800918-41800978)
chr7 (44-76)||(8770897-8770929)
chr7 (44-75)||(48620236-48620267)
chr7 (22-72)||(40017089-40017139)
[»] chr5 (9 HSPs)
chr5 (7-75)||(34311662-34311730)
chr5 (13-76)||(2893652-2893715)
chr5 (7-75)||(3169132-3169200)
chr5 (7-75)||(35055469-35055537)
chr5 (7-75)||(35072211-35072279)
chr5 (43-75)||(29740769-29740801)
chr5 (13-76)||(38356935-38356996)
chr5 (7-75)||(11817256-11817324)
chr5 (16-72)||(12904383-12904439)
[»] chr8 (5 HSPs)
chr8 (10-75)||(40467287-40467353)
chr8 (7-75)||(15148189-15148257)
chr8 (44-75)||(40471324-40471355)
chr8 (18-75)||(23898383-23898441)
chr8 (37-75)||(44083648-44083686)
[»] scaffold0014 (1 HSPs)
scaffold0014 (26-75)||(72330-72379)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-72)||(41601-41665)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 85 - 573
Target Start/End: Complemental strand, 533247 - 532759
Alignment:
Q  85 tttatactactggaccaaagcaaatggaggcactgcttgattttcaacaccatcatttgtgttttgtttaaggtccgtttgtttcatatttttataaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  533247 tttatactactggaccaaagcaaatggaggcactgcttgattttcaacaccatcatttgtgttttgtttaaggtccgtttgtttcatatttttataaaaa 533148  T
Q  185 -gagtcactttgtcgttttgaagtgtttgtttagggttataaaaatatcattttctnnnnnnnnnta-ttgactcaaataaaaaactattaggattagat 282  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||    
T  533147 agagtcactttgtcgttttgaagtgtttgtttagggttataaaaatatcattttctaaaaaaaaaaaattgactcaaataaaaaactattaggattagat 533048  T
Q  283 ctttcaaaatatannnnnnn-caaaaacaaagagataacgtatgaacaagttaaaatttatttttataagaaaaatgatttttatggatcattaacgaac 381  Q
     |||||||||||         ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  533047 ttttcaaaatattttttttttcaaaaacaaagagataatgtatgaacaagttaaaattcatttttataagaaaaatgatttttatggatcattaacgaac 532948  T
Q  382 ataaatagttccagannnnnnnaaagatgaaacaaaaataatattatctagcttaattgtcaagtaagtctctcagcctactataactatgaccgttaga 481  Q
    |||||||||| ||||       ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||   |||||||||||    
T  532947 ataaatagtttcagatttttttaaagacgaaacaaaaataatattatctaccttaattgtcaagtaagtctctcagcctacaataa---tgaccgttaga 532851  T
Q  482 aaaaaggatatcgatggttggataacaccgagaagggtcgagggcaacaacatactaatgaatgatatcacaaacggattgcgacaccaaat 573  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  532850 aaaaaggatatcgatgattggatagcaccgagaagggtcgagggcaacaacatactaatgtatgatatcaccaacggattgcgacaccaaat 532759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 1550872 - 1550803
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| |||||||||||    ||||| ||||||||||||||||||||||||||||||||||    
T  1550872 gtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttcttc 1550803  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 21548371 - 21548311
Alignment:
Q  16 gcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| ||||||||||||  |||||| |||||||||||| |||||||||||||||||||||    
T  21548371 gcacaccttgtgcttggggactgctgtttggtgtgttatttaatttcattttgatttcttc 21548311  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 6004494 - 6004432
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| |||||||||| || || ||| |||||||||||||||||| ||||||||||||||    
T  6004494 taggcacaccttgtgcttgagaactactgtttggtgtgttatataattccattttgatttctt 6004432  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 6008024 - 6007962
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| |||||||||| || ||  || |||||||||||||||||| ||||||||||||||    
T  6008024 taggcacaccttgtgcttgagaactaatgtttggtgtgttatataattccattttgatttctt 6007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 24378303 - 24378241
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| ||| ||||||||  |||||| |||||||||||| ||||| ||||||||||||||    
T  24378303 taggcacaccttatgcttggggactgctgtttggtgtgttatttaattccattttgatttctt 24378241  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 31297774 - 31297828
Alignment:
Q  23 ttgtgcttgggatctgctggttggtgt-gttatataatttcattttgatttcttc 76  Q
    |||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||    
T  31297774 ttgtgcttgggaactgctgattgttgtagttatataatttcattttgatttcttc 31297828  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23066669 - 23066728
Alignment:
Q  17 cacatcttgtgcttgggatctgctggttggtgtgtta-tataatttcattttgatttctt 75  Q
    |||| ||||||||||||| |||||| ||| |||| || ||||||||||||||||||||||    
T  23066669 cacaccttgtgcttgggaactgctgattgttgtggtaatataatttcattttgatttctt 23066728  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 26010398 - 26010335
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    |||||||| ||||||||||||  |||||  || ||||||||| ||||| |||||||||||||||    
T  26010398 taggcacaccttgtgcttggggactgctatttagtgtgttatttaattccattttgatttcttc 26010335  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 9564866 - 9564834
Alignment:
Q  43 ttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| ||||||||||||||||||||||||    
T  9564866 ttggtgtgatatataatttcattttgatttctt 9564834  T

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Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 20823098 - 20823166
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20823098 gtatcctaggcacatcttgtgcttgggatctgctggttggtgtattatataatttcattttgatttctt 20823166  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 36708417 - 36708349
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| ||||||||  |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  36708417 gtatcctaggcacacattgtgcttgggaactgctgcttggtgtgttatataatttcattttgatttctt 36708349  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 15484391 - 15484459
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| |||||||||||||||| |||||||    
T  15484391 gtatcctaggcacatcttgtgcttgggaactgctgcttgatgtggtatataatttcattttaatttctt 15484459  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 17605428 - 17605497
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| |||||||||||    ||||| ||||||||||||||||||||||||||||||||||    
T  17605428 gtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttcttc 17605497  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 42676052 - 42676114
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| ||||||||||||  |||||| |||||||||||| ||||| ||||||||||||||    
T  42676052 taggcacaccttgtgcttggggactgctgtttggtgtgttatttaattccattttgatttctt 42676114  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 18369564 - 18369633
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| ||| |||||||||  ||||| ||||| || |||||||||||||||||||||||||    
T  18369564 gtatcttaggcacaccttatgcttgggaattgctgtttggtatgatatataatttcattttgatttcttc 18369633  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 45683707 - 45683638
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| |||||||||||    |||||  |||||||||||||||||||||||||||||||||    
T  45683707 gtatcctaggcacaccttgtgcttggatattgctgtgtggtgtgttatataatttcattttgatttcttc 45683638  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 55223183 - 55223114
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  55223183 gtatcctaggcacaccttgtgcttgggaaccgctgcttggtgtgttatataatttcattttgatttcttc 55223114  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 26693453 - 26693392
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| ||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||    
T  26693453 taggcacaccttgtgcttgggaactgctggttggtgtgtt-tttaattccattttgatttctt 26693392  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 50451612 - 50451544
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||| | ||||||| ||||| || ||| |||||||| ||||||||||||||||||||||||    
T  50451612 gtatcttaggcataccttgtgcctgggagctactgcttggtgtgatatataatttcattttgatttctt 50451544  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 46639635 - 46639667
Alignment:
Q  44 tggtgtgttatataatttcattttgatttcttc 76  Q
    |||||||||||||||||||||||||||||||||    
T  46639635 tggtgtgttatataatttcattttgatttcttc 46639667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 37318268 - 37318206
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||||||  ||||||||| || |||||| |||||||||||| ||||| |||| |||||||||    
T  37318268 taggcacactttgtgcttgagaactgctgtttggtgtgttatttaattccattatgatttctt 37318206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 43510404 - 43510466
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  43510404 taggtacaccttgtgcttgggaactgctgcttggtgtgttatataatttcattttgatttctt 43510466  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 34854254 - 34854316
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| ||| ||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  34854254 taggcacaccttctgcttgggaactgctctttggtgtgttatataatttcattttgatttctt 34854316  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 43670005 - 43669954
Alignment:
Q  24 tgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||||| ||| |||||| ||||||||||||||||||  |||||||||||||    
T  43670005 tgtgcttaggaactgctgtttggtgtgttatataattctattttgatttctt 43669954  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 16212717 - 16212648
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||| | ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  16212717 gtatcctaggcagaccttgtgcttggaaactgctgcttggtgtgttatataatttcattttgatttcttc 16212648  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 16084172 - 16084240
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||| ||| ||||||||| |||  | ||||||| |||||||||||||||||||||||||    
T  16084172 gtatcctaggcacagcttatgcttgggaactgacgcttggtgtattatataatttcattttgatttctt 16084240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 36069566 - 36069630
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgtta-tataatttcattttgatttcttc 76  Q
    |||||||| ||||||||||||| |||||| ||| |||| || |||||||||||||||||||||||    
T  36069566 taggcacaccttgtgcttgggaactgctgattgttgtggtaatataatttcattttgatttcttc 36069630  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 37643030 - 37642962
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| ||| |||| |||||| |||| | | |||| |||||||||||||||||||||||||||||||||    
T  37643030 gtatcctagacacaccttgtgtttggaaaccgctgtttggtgtgttatataatttcattttgatttctt 37642962  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 3952808 - 3952770
Alignment:
Q  37 tgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  3952808 tgctgcttggtgtgttatataatttcattttgatttctt 3952770  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 28401158 - 28401227
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||| | |||||||||||    |||||  |||||||||||||||||||||||||||||||||    
T  28401158 gtatcctaggcataccttgtgcttggatattgctgtgtggtgtgttatataatttcattttgatttcttc 28401227  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 18670694 - 18670634
Alignment:
Q  15 ggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  18670694 ggcacaccttgtgcttgggaactgctgcttggtgtgatatataatttcattttgatttctt 18670634  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 34458772 - 34458835
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    |||||||| ||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||    
T  34458772 taggcacaccttgtgcttgggaactgctgtttggtgtgttatttaattccattttgatttcttc 34458835  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 15765503 - 15765572
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| |||||||||||    ||||| ||||||||||||||||||||||||||||||||||    
T  15765503 gtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttcttc 15765572  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 25185789 - 25185858
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| |||||||| |||||||||||    ||||| ||||||||||||||||||||||||||||||||||    
T  25185789 gtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttcttc 25185858  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 18766945 - 18766874
Alignment:
Q  4 gtagtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||| |||||||| |||||||||||    ||||| ||||| |||||||||||||||||||||||||||    
T  18766945 gtagtatcctaggcacaccttgtgcttggatattgctgtttggtatgttatataatttcattttgatttctt 18766874  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41800978 - 41800918
Alignment:
Q  16 gcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    ||||| ||||||||||||  |||||| |||||||||||| ||||| |||||||||||||||    
T  41800978 gcacaccttgtgcttggggactgctgtttggtgtgttatttaattccattttgatttcttc 41800918  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 8770929 - 8770897
Alignment:
Q  44 tggtgtgttatataatttcattttgatttcttc 76  Q
    |||||||||||||||||||||||||||||||||    
T  8770929 tggtgtgttatataatttcattttgatttcttc 8770897  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 48620236 - 48620267
Alignment:
Q  44 tggtgtgttatataatttcattttgatttctt 75  Q
    ||||||||||||||||||||||||||||||||    
T  48620236 tggtgtgttatataatttcattttgatttctt 48620267  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 40017139 - 40017089
Alignment:
Q  22 cttgtgcttgggatctgctggttggtgtgttatataatttcattttgattt 72  Q
    ||||||||||||| |||||| || || || |||||||||||||||||||||    
T  40017139 cttgtgcttgggaactgctgcttagtatggtatataatttcattttgattt 40017089  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 34311730 - 34311662
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| ||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||    
T  34311730 gtatcctagacacaccttgtgcttgggaactgctgcttggtgtgttatataatttcattttaatttctt 34311662  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 2893715 - 2893652
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    |||||||| ||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||    
T  2893715 taggcacaccttgtgcttgggaactgctgtttggtgtgttatttaattccattttgatttcttc 2893652  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 3169132 - 3169200
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||| |||||||||||    ||||| |||||||||||||||||||||||||||||||||    
T  3169132 gtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttctt 3169200  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 35055537 - 35055469
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||| ||||||||||||| || | | |||||||| ||||||||||||||||||||||||    
T  35055537 gtatcttaggcacaccttgtgcttgggaactacggcttggtgtggtatataatttcattttgatttctt 35055469  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 35072279 - 35072211
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||| ||||||||||||| || | | |||||||| ||||||||||||||||||||||||    
T  35072279 gtatcttaggcacaccttgtgcttgggaactacggcttggtgtggtatataatttcattttgatttctt 35072211  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 29740769 - 29740801
Alignment:
Q  43 ttggtgtgttatataatttcattttgatttctt 75  Q
    |||||||||||||||||||||||||||||||||    
T  29740769 ttggtgtgttatataatttcattttgatttctt 29740801  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 38356996 - 38356935
Alignment:
Q  13 taggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttcttc 76  Q
    |||||||| ||||||||||||   ||||| |||||||  |||||||||||||||||||||||||    
T  38356996 taggcacaccttgtgcttgggtattgctgtttggtgt--tatataatttcattttgatttcttc 38356935  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 11817324 - 11817256
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||| ||| |||||||    ||||| |||||||||||| || |||||||||||||||||    
T  11817324 gtatcctaggcacaccttatgcttggacattgctgtttggtgtgttatttattttcattttgatttctt 11817256  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 12904439 - 12904383
Alignment:
Q  16 gcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgattt 72  Q
    ||||| ||| ||||||||  |||||| |||||||||||| ||||| |||||||||||    
T  12904439 gcacaccttatgcttggggactgctgtttggtgtgttatttaattccattttgattt 12904383  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 40467353 - 40467287
Alignment:
Q  10 tcataggcacatcttgtgcttgggatctgctggttggtgtg-ttatataatttcattttgatttctt 75  Q
    ||||||||||| ||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||    
T  40467353 tcataggcacaccttgtgcttgggaactgctgattgttgtggttatataatttcattttgatttctt 40467287  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 15148189 - 15148257
Alignment:
Q  7 gtatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| |||||||||||| ||||||| |  ||||| ||||||||||||||||||||||||| |||||||    
T  15148189 gtatcctaggcacatcttatgcttggaaattgctgtttggtgtgttatataatttcattttaatttctt 15148257  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 40471324 - 40471355
Alignment:
Q  44 tggtgtgttatataatttcattttgatttctt 75  Q
    ||||||||||||||||||||||||||||||||    
T  40471324 tggtgtgttatataatttcattttgatttctt 40471355  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23898383 - 23898441
Alignment:
Q  18 acatcttgtgcttgggatctgctggttggtgtgtta-tataatttcattttgatttctt 75  Q
    ||||||| ||||||||| |||||| ||| |||| || ||||||||||||||||||||||    
T  23898383 acatcttatgcttgggaactgctgattgttgtggtaatataatttcattttgatttctt 23898441  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 44083648 - 44083686
Alignment:
Q  37 tgctggttggtgtgttatataatttcattttgatttctt 75  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  44083648 tgctgtttggtgtgttatataattttattttgatttctt 44083686  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 72330 - 72379
Alignment:
Q  26 tgcttgggatctgctggttggtgtgttatataatttcattttgatttctt 75  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||    
T  72330 tgcttgagaactgctgtttggtgtgttatataatttcattttgatttctt 72379  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 41665 - 41601
Alignment:
Q  8 tatcataggcacatcttgtgcttgggatctgctggttggtgtgttatataatttcattttgattt 72  Q
    |||| |||||||| |||||||||||    | ||| ||||||||||||||||||||||||||||||    
T  41665 tatcctaggcacaccttgtgcttggatattactgtttggtgtgttatataatttcattttgattt 41601  T

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