View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1393_high_4 (Length: 411)
Name: NF1393_high_4
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 15555817 - 15556190
Alignment:
| Q |
9 |
agcaaaggagcaaattcaaaagagttttaatggtgtcaaaaagaggtatctttgtttggtttaattttatttagttattatctgtgtcttctggtctaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15555817 |
agcaaaggagcaaattcaaaagagttttaatggtgtcaaaaagaggtatctttgtttggtttaattttatttagttattatctgtgtgttctggtctaat |
15555916 |
T |
|
| Q |
109 |
tccataagttaaacttacttaattctttttactttgtagttacaaacctgtttggaacatcattgatgatagatgggatagaatgttacataggcctttg |
208 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15555917 |
tccagaagttaaacttacttaattctttttactttgtagttacaaacctgtttggaacatcattgatgatagatgggatagaatgttacataggcctttg |
15556016 |
T |
|
| Q |
209 |
catgctgcagcctattatcttaacccacaacttcattaccgtcctgaatttaaagctgatattgaggtgagaaaaggcttaatggattgtataactagga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15556017 |
catgctgcagcctattatcttaacccacaacttcattaccgtcctggatttaaagctgatattgaggtgagaaaaggcttaatggattgtataactagga |
15556116 |
T |
|
| Q |
309 |
tggtggaagaccctgaagaacaagctaaaattgaagttcaaatgcatgacttcaagaaacaaatagggtatttc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15556117 |
tggtggaagaccctgaagaacaagctaagattgaagttcaaatgcatgacttcaagaaacaaatagggtatttc |
15556190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 8989171 - 8988942
Alignment:
| Q |
9 |
agcaaaggagcaaattcaaaagagttttaatggtgtcaaaaagaggtatctttgtttggtttaattttatttagttattatctgtgtcttctggtctaat |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
8989171 |
agcaaaggagcaaattcaaaagaattttaatggtgtcaaaaggagacatctttgtttggtttaattttatttagttata-----tgtgatctggtctaat |
8989077 |
T |
|
| Q |
109 |
tccataagttaaacttacttaattctttttactttgtagttacaaacctgtttggaacatcattgatgatagatgggatagaatgttacataggcctttg |
208 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
8989076 |
tccaaaagttaaa---acttaattatttttactttgtagttacaaacctattttgaacatcattgatgatagatgggataaaatatttcataggcctttg |
8988980 |
T |
|
| Q |
209 |
catgctgcagcctattatcttaacccacaacttcatta |
246 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| ||||| |
|
|
| T |
8988979 |
catgttgcagcttattatcttaacccgcaactacatta |
8988942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 8988924 - 8988896
Alignment:
| Q |
345 |
ttcaaatgcatgacttcaagaaacaaata |
373 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8988924 |
ttcaaatgcatgacttcaagaaacaaata |
8988896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University