View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1393_low_12 (Length: 331)
Name: NF1393_low_12
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 6119579 - 6119872
Alignment:
| Q |
30 |
ggtatttttagacttgtaacacaagtaaaatagttacacaactaactactaactaacagcaagtttggtattttcctaactaatcatggttgaattagtc |
129 |
Q |
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| T |
6119579 |
ggtatttttagacttgtaacacaagtaaaatagttacacaactaactactaactaacagcaagtttggtattttcctaactaatcatggttgaattagtc |
6119678 |
T |
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| Q |
130 |
acaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatc---aagtaacaaaaatccgtcaactttcgctccattagtca |
226 |
Q |
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| T |
6119679 |
acaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatctctaagtaacaaaaatccgtcaactttcgctccattagtca |
6119778 |
T |
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| Q |
227 |
aggcatctgcaatttgagactcagttggacaatgcatcactttaagccttccattgttcaccttctctcttaggaaataaaatattacccctatg |
321 |
Q |
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| T |
6119779 |
aggcatctgcaatttgagactcagttggacaatgcatcactttaagccttccattgttcaccttctctcttaggaaataaaata-tacccctatg |
6119872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 6172813 - 6172659
Alignment:
| Q |
112 |
atcatggttgaattagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatc---aagtaacaaaaatccgtcaa |
208 |
Q |
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| T |
6172813 |
atcatggttgaattactcacaccattctctcttaattcaaccttgtattcatcaaattgaatttctcctagttcatctctaagtaacaaaaacccatcaa |
6172714 |
T |
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| Q |
209 |
ctttcgctccattagtcaaggcatctgcaatttgagactcagttggacaatgcat |
263 |
Q |
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| T |
6172713 |
cattcactccattagtcaaggcatctgcaattggagactcagttggacaatgcat |
6172659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 6172872 - 6172825
Alignment:
| Q |
30 |
ggtatttttagacttgtaacacaagtaaaatagttacacaactaacta |
77 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6172872 |
ggtatttttagacttgcaacacaagtaaaatagttacacagctaacta |
6172825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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