View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1393_low_13 (Length: 313)
Name: NF1393_low_13
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_low_13 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 12176818 - 12177061
Alignment:
| Q |
73 |
atgaacccagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
169 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
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| T |
12176818 |
atgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggatttttttgaa |
12176917 |
T |
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| Q |
170 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12176918 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctg |
12177017 |
T |
|
| Q |
270 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12177018 |
gttgtcacaatgactctgctaccaactccaaggcaatcatgccc |
12177061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 12421246 - 12421489
Alignment:
| Q |
73 |
atgaacccagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
169 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
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| T |
12421246 |
atgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggatttttttgaa |
12421345 |
T |
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| Q |
170 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12421346 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctg |
12421445 |
T |
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| Q |
270 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12421446 |
gttgtcacaatgactctgctaccaactccaaggcaatcatgccc |
12421489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 12188139 - 12188382
Alignment:
| Q |
73 |
atgaacccagaactttcaaagccaaagggttgccggc---ataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
169 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
12188139 |
atgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgttgaa |
12188238 |
T |
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| Q |
170 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
269 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
12188239 |
agcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctg |
12188338 |
T |
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| Q |
270 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12188339 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
12188382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 12432567 - 12432810
Alignment:
| Q |
73 |
atgaacccagaactttcaaagccaaagggttgccggc---ataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
12432567 |
atgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgttgaa |
12432666 |
T |
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| Q |
170 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
269 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
12432667 |
agcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctg |
12432766 |
T |
|
| Q |
270 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12432767 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
12432810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 9393984 - 9394227
Alignment:
| Q |
73 |
atgaacccagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
169 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| |||||||| |||| || ||| |
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| T |
9393984 |
atgaacccataactttcaaagccaaagagtcgccttttgcataagaaactacattatttgatatctcctcatacccctcattcggaacgattttgttgaa |
9394083 |
T |
|
| Q |
170 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| |
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| T |
9394084 |
agcattcaaactgaacaacctgatggagttttgaaagttcatttccttaacttgaagaatttcgtcaatccctctgcctatcaacacatgcttatctctg |
9394183 |
T |
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| Q |
270 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccc |
313 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9394184 |
gttgtcacaatttctctgctaccagctccaaggcaatcatgccc |
9394227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 13165338 - 13165238
Alignment:
| Q |
198 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
297 |
Q |
| |
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||||| |||||||| | |||||||| || |||||| ||||||||||| | ||| |||||||||||| || || |||||||||||| |||||||||||| |
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| T |
13165338 |
ttttgggagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctc |
13165239 |
T |
|
| Q |
298 |
c |
298 |
Q |
| |
|
| |
|
|
| T |
13165238 |
c |
13165238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 32633728 - 32633624
Alignment:
| Q |
194 |
ggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctacca |
293 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||| || || || ||||||||| |||||||| |
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| T |
32633728 |
ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca |
32633629 |
T |
|
| Q |
294 |
gctcc |
298 |
Q |
| |
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|||| |
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| T |
32633628 |
tctcc |
32633624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 5571829 - 5571726
Alignment:
| Q |
198 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
297 |
Q |
| |
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||||| |||||||| | |||||||| || |||||||||||||||||| | ||| |||||| ||||| || || |||||||||||| ||||||||| || |
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| T |
5571829 |
ttttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtc |
5571730 |
T |
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| Q |
298 |
caag |
301 |
Q |
| |
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|||| |
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| T |
5571729 |
caag |
5571726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 42265724 - 42265792
Alignment:
| Q |
73 |
atgaacccagaactttcaaagccaaagggttgcc---ggcataagaaactacattgtttgatatctcct |
138 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
42265724 |
atgaacccagaactttcaaagccaaatggttgccttttgcataagaaactacattgtttgatatttcct |
42265792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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