View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1393_low_16 (Length: 262)
Name: NF1393_low_16
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_low_16 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0570 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 23500602 - 23500345
Alignment:
| Q |
5 |
tgatgtgcctggccatagttatcatacaattttttaaaatctacacaattttttggaattttctttaggatttcacttcctnnnnnnntaagatattaat |
104 |
Q |
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| T |
23500602 |
tgatgtgcctgcccatagttatcatacaattttttaaaatctataaaattttttgaaattttctttaggatttcacttcctaaaaaaataagacattaat |
23500503 |
T |
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| Q |
105 |
tatcttccgtgtcttacgtaattgattttctttatgtgctctactctgcctccatgtttaccataaattttgttatgcactaatcacatagatgtatttt |
204 |
Q |
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| T |
23500502 |
tatcttctgtgtcttacgtaattgattttctttatgtgctctactctgcctccatgtttaccataaattttgttatgcactaatcacatagatgta-ttt |
23500404 |
T |
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| Q |
205 |
tcttctg-tgtaaaagattcttccccctctttcctatgttaggagtgaaccagatttca |
262 |
Q |
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| T |
23500403 |
tcttctgttgtaaaacattcttcgccctctttcctatgttaggagtgaaccagatttca |
23500345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 23448843 - 23448577
Alignment:
| Q |
1 |
atgttgatgtgcctggccatagttatcatacaatttttt-aaaatctacacaattttttggaattttctttaggatttcacttcctnnnnnnntaagata |
99 |
Q |
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| T |
23448843 |
atgttgatgtgcctggccatagttatcatacaatttttttaaaatctatacaattttttggaattttctttaggatttcacttcctaaaaaaataagaca |
23448744 |
T |
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| Q |
100 |
ttaattatcttccgtgtcttacgtaattgattttctttatgtgctctactctgcctccatgtttaccataaattttgttatgcactaatcacata----g |
195 |
Q |
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| T |
23448743 |
ttaattatcttctgtgtcttacgtaattgattttctttatgtgctctactctgccaccatgttgaatataaattttattatgtcctaatcatatatatga |
23448644 |
T |
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| Q |
196 |
atgtatttttcttctg-tgtaaaagattcttccccctctttcctatgttaggagtgaaccagatttca |
262 |
Q |
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| T |
23448643 |
atgcatttttcttttgttgtaaaacattctt-cccatctttcatatgttaggagtgaaccagacttca |
23448577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 23406177 - 23406145
Alignment:
| Q |
53 |
ttttttggaattttctttaggatttcacttcct |
85 |
Q |
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| T |
23406177 |
ttttttagaattttctttaggatttcacttcct |
23406145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 10408 - 10529
Alignment:
| Q |
141 |
tgctctactctgcctccatgtttaccataaattttgttatgcactaatcacatagatgtatttttcttctgt-gtaaaagattcttccccctctttccta |
239 |
Q |
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|||| ||||||||| |||||||| |||||||||||| || ||||||| || ||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
10408 |
tgctatactctgccaccatgttttt-ataaattttgttttgtgctaatcatatgcatgtatttttcttctgttgtaaacaattcttccccctctttccta |
10506 |
T |
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| Q |
240 |
tgttaggagtgaaccagatttca |
262 |
Q |
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| T |
10507 |
tgttaggagtgaaccagatttca |
10529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 10298 - 10330
Alignment:
| Q |
53 |
ttttttggaattttctttaggatttcacttcct |
85 |
Q |
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| T |
10298 |
ttttttggaattttctttaggatttaacttcct |
10330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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