View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1393_low_18 (Length: 254)
Name: NF1393_low_18
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33287916 - 33288142
Alignment:
| Q |
1 |
catatggaatgcattatgatgcagaatctttgcttgtgggctcaacacaacaaataaaggcttctgatggaaatgccactcctgctttatgaacttgatg |
100 |
Q |
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| T |
33287916 |
catatggaatgcattatgatgcagaatctttccttgtgggctcaacacaacaaccaaaggcttctgattgaaatgcaactcctcctttatgtacttgatg |
33288015 |
T |
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| Q |
101 |
cctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcagtccattcatccacaacgg |
200 |
Q |
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| T |
33288016 |
cctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcctcaacttatcagtccattcatccacaacgg |
33288115 |
T |
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| Q |
201 |
gaatccacacaatcttgtactggcttc |
227 |
Q |
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| T |
33288116 |
gaatccacacaatcttgtactggcttc |
33288142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33140386 - 33140160
Alignment:
| Q |
1 |
catatggaatgcattatgatgcagaatctttgcttgtgggctcaacacaacaaataaaggcttctgatggaaatgccactcctgctttatgaacttgatg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||| |||||||| |
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| T |
33140386 |
catatggaatgcattatgatgcagaatctttccttgtgggctcaacacaacaaataaaggcttctgcttgaaatgcaactcctcctttatgtacttgatg |
33140287 |
T |
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| Q |
101 |
cctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcagtccattcatccacaacgg |
200 |
Q |
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| T |
33140286 |
cctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcattccattcctccacaatgg |
33140187 |
T |
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| Q |
201 |
gaatccacacaatcttgtactggcttc |
227 |
Q |
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| T |
33140186 |
gaacccacacaatcttgtgttggcttc |
33140160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33158733 - 33158519
Alignment:
| Q |
1 |
catatggaatgcattatgatgcagaatctttgcttgtgggctcaacacaacaaataaaggcttctgatggaaatgccactcctgctttatgaacttgatg |
100 |
Q |
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|||||| |||||||| ||||||||||||||| |||||| ||||||||||||| ||||| ||| | | ||||||| |||||| |||||||||| ||||| |
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| T |
33158733 |
catatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatg |
33158634 |
T |
|
| Q |
101 |
cctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcagtccattcatccacaacgg |
200 |
Q |
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| T |
33158633 |
ccttttatggttgcaaagtgatgtaacacataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaatag |
33158534 |
T |
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| Q |
201 |
gaatccacacaatct |
215 |
Q |
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||||||||||||||| |
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| T |
33158533 |
gaatccacacaatct |
33158519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33181576 - 33181362
Alignment:
| Q |
1 |
catatggaatgcattatgatgcagaatctttgcttgtgggctcaacacaacaaataaaggcttctgatggaaatgccactcctgctttatgaacttgatg |
100 |
Q |
| |
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|||||| |||||||| ||||||||||||||| |||||| ||||||||||||| ||||| ||| | | ||||||| |||||| |||||||||| ||||| |
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| T |
33181576 |
catatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatg |
33181477 |
T |
|
| Q |
101 |
cctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcagtccattcatccacaacgg |
200 |
Q |
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| T |
33181476 |
ccttttatggttgcaaagtgatgtaacacataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaatag |
33181377 |
T |
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| Q |
201 |
gaatccacacaatct |
215 |
Q |
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||||||||||||||| |
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| T |
33181376 |
gaatccacacaatct |
33181362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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