View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1393_low_24 (Length: 208)

Name: NF1393_low_24
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1393_low_24
NF1393_low_24
[»] chr3 (16 HSPs)
chr3 (1-156)||(23500783-23500938)
chr3 (1-156)||(23449020-23449175)
chr3 (8-156)||(23406506-23406654)
chr3 (3-156)||(23353652-23353805)
chr3 (1-156)||(23435221-23435376)
chr3 (1-156)||(23465153-23465308)
chr3 (1-156)||(23455784-23455939)
chr3 (1-156)||(23441630-23441785)
chr3 (1-156)||(23474162-23474317)
chr3 (1-153)||(23388139-23388291)
chr3 (9-156)||(23480518-23480665)
chr3 (38-156)||(36034062-36034180)
chr3 (38-156)||(36017156-36017274)
chr3 (1-156)||(36004456-36004611)
chr3 (1-156)||(36025217-36025372)
chr3 (71-156)||(21088395-21088480)
[»] scaffold0201 (1 HSPs)
scaffold0201 (1-149)||(13327-13475)
[»] scaffold0570 (2 HSPs)
scaffold0570 (1-149)||(9865-10013)
scaffold0570 (57-108)||(3482-3533)
[»] chr4 (1 HSPs)
chr4 (1-156)||(12894821-12894976)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23500783 - 23500938
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23500783 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 23500882  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23500883 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23500938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23449020 - 23449175
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23449020 ttacctataatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatcttgc 23449119  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23449120 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23449175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 23406506 - 23406654
Alignment:
Q  8 taatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgtt 107  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23406506 taattttgagagtcccaaccaaccaaattagctgcctcagtgagagaatctttccatttcttcaacttgtcattattgtgctttaaatctcgcttatgtt 23406605  T
Q  108 tcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||    
T  23406606 ttgcaaaggcttgcttgtaactcccggtctgcttcctcacatttgatgg 23406654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 23353652 - 23353805
Alignment:
Q  3 acctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgctt 102  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  23353652 acctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcagctttccatttctccaacttgtcattattgtgcttcaaatctcgctt 23353751  T
Q  103 atgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23353752 atgtttttcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23353805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23435221 - 23435376
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| |||||| |||||||||||||||| |||||||||||||| |||||||   |||||||||| | |||||||||||||||||||||||||||||||    
T  23435221 ttacctataattttgagagtcccaaccaactaaattagctgcctcagtgagagcggctttccatttatgcaacttgtcattattgtgcttcaaatctcgc 23435320  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  23435321 ttatgttttgcaaatgcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23435376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23465153 - 23465308
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||| || |||||||||||||||| ||||    
T  23465153 ttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatttcgc 23465252  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23465253 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23465308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23455784 - 23455939
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| |||||| |||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||||| |||||||||||||||||||| ||    
T  23455784 ttacctataattttgagagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattattgtgcttcaaatcttgc 23455883  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  23455884 ttatgttttgcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatgg 23455939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23441630 - 23441785
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||| ||  |||||||||||||||  |||||||||||||    
T  23441630 ttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctcttcaaatctcgc 23441729  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  23441730 ttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtgatgg 23441785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23474162 - 23474317
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||| ||  |||||||||||||||  |||||||||||||    
T  23474162 ttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctcttcaaatctcgc 23474261  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |||||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  23474262 ttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtgatgg 23474317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 23388139 - 23388291
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||  || ||||||||||||| ||| ||||||||||||  ||||   ||||||||| ||  ||||||||||||||| ||||||||||||||    
T  23388139 ttacctgtaattctgaaagtcccaaccaactaaactagctgcctcggcaagagcggctttccattcctgtaacttgtcattattgagcttcaaatctcgc 23388238  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtga 153  Q
     ||||||| |  |||||||||| ||||||||| ||||||||||||||||||||    
T  23388239 atatgttttgtgaaggcttgctcgtaactcccagtctgcttcctcacatgtga 23388291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 23480518 - 23480665
Alignment:
Q  9 aatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgttt 108  Q
    ||||| || ||||||||||  | ||| |||||||||| |||||||   ||||||||| ||  |||||||||||||||  |||||||||||||||||||||    
T  23480518 aattttgaaagtcccaaccgcctaaactagctgcctcagtgagagcggctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttt 23480617  T
Q  109 cgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
     ||||| ||||||| ||||||||||||||| |||||||||||||||||    
T  23480618 tgcaaaagcttgctcgtaactcccggtctggttcctcacatgtgatgg 23480665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 36034062 - 36034180
Alignment:
Q  38 gctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgtttcgcaaaggcttgcttgtaactcccggtct 137  Q
    ||||| || ||||||| ||||||| |||||| ||||||||| || ||||||||||||| | ||||||| || |||||||||||||||||||||||  | |    
T  36034062 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttatgctttgcaaaggcttgcttgtaactcccaattt 36034161  T
Q  138 gcttcctcacatgtgatgg 156  Q
    | |||||||||||||||||    
T  36034162 gattcctcacatgtgatgg 36034180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 36017156 - 36017274
Alignment:
Q  38 gctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgtttcgcaaaggcttgcttgtaactcccggtct 137  Q
    ||||| || ||||||| ||||||| |||||| ||||||||| || ||||||||||||| | ||||||  || |||||||||||||||||||||||  | |    
T  36017156 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttattctttgcaaaggcttgcttgtaactcccaattt 36017255  T
Q  138 gcttcctcacatgtgatgg 156  Q
    | |||||||||||||||||    
T  36017256 gattcctcacatgtgatgg 36017274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 36004456 - 36004611
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||| ||| ||  | ||||| ||||| || || |||| ||||||||||||||| ||| | || || || ||||||||||||||     
T  36004456 ttacctgtaattttgagagtgccaccctgctaaattggctgcttcagttagagcatctttccatttctttaacatttctttgttctgcttcaaatctcgt 36004555  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
      |||||| ||||||||||||   ||||| ||  | || |||||||||||||||||    
T  36004556 gcatgttttgcaaaggcttgcccataacttccattttgattcctcacatgtgatgg 36004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 36025217 - 36025372
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||| |||||||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| ||  | |||||||||||| |     
T  36025217 ttacttgtaattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgt 36025316  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    | ||||||  |||| |||  | | ||||| ||  |||| |||||||||||||||||    
T  36025317 tcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatgg 36025372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 21088395 - 21088480
Alignment:
Q  71 aacttgtcattattgtgcttcaaatctcgcttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    ||||||||||||| || ||| ||||||||| |||| ||  |||||| || |||||||||||  ||||||||| ||| |||| ||||    
T  21088395 aacttgtcattatcgttctttaaatctcgcatatgcttttcaaaggttttcttgtaactccaagtctgcttcttcatatgtaatgg 21088480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 13327 - 13475
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||| || |||||||||||||||||||||    
T  13327 ttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatctcgc 13426  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacat 149  Q
    |||||||| ||||||||||||| |||||| || ||||||||||||||||    
T  13427 ttatgttttgcaaaggcttgctggtaacttccagtctgcttcctcacat 13475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10013 - 9865
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||   ||||||| |||||||||||||||||||||  |||||||||||||    
T  10013 ttacctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcggctttccagttcttcaacttgtcattattgctcttcaaatctcgc 9914  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacat 149  Q
    ||||||||  |||||||||||| |||||| || |||||||| |||||||    
T  9913 ttatgtttttcaaaggcttgctcgtaacttccagtctgctttctcacat 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 3533 - 3482
Alignment:
Q  57 ctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgttt 108  Q
    |||||||||||| |||||||||||||||||||||||  |||||| |||||||    
T  3533 ctttccatttctgcaacttgtcattattgtgcttcagttctcgcctatgttt 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 12894976 - 12894821
Alignment:
Q  1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||| ||| ||| | ||||| ||||| ||  |||||| |||||||||||| |  ||| | || ||   ||||||||||||| ||    
T  12894976 ttacctgtaattttgagagtgccacccagctaaattggctgcttcaatgagagcatctttccatttttgtaacatatctttgccgtgcttcaaatcttgc 12894877  T
Q  101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 156  Q
    |  ||||| |||||||||||  |||| ||||| || || |||||||||||||||||    
T  12894876 tcgtgttttgcaaaggcttgactgtacctccctgtttgattcctcacatgtgatgg 12894821  T

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