View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1393_low_3 (Length: 554)
Name: NF1393_low_3
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 395427 - 395966
Alignment:
| Q |
1 |
ccacgtccaacacaacatagtcgatcattggcttctccaattaannnnnnnnnnnnngagttcattagataagtgtagatgattccctcaacnnnnnnnn |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
395427 |
ccacgtccaacacaacatagtagatcattggcttctccaattaatatatttttttt-gagttcattagataagtgtagatgattccctcaaaaaaaaaaa |
395525 |
T |
|
| Q |
101 |
nn--gataagtgtagatgattgaaatattgatcaatgacatgaatgattctgaaagtatagtataaaacgttggtttgataaatcaagtagtgcatctgc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
395526 |
aaaagataagtgtagatgattgaaatattgatcaatgacatgaatgattctgaaagta--gtataaaacgttggtttgataaatcaagtagtgcatctgc |
395623 |
T |
|
| Q |
199 |
cggtaggtctactttctttcatgttactttcatcccactttaactcatatgtcaacaatgaaatatcatatttcggcttgatcaataactttaggcctta |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
395624 |
cggtaggtctactttctttcatgttactttcatcccactttaactcatatgtcaacaatgaaatatcatatttcggcttgatcaataactttaggcctta |
395723 |
T |
|
| Q |
299 |
tttagacaaacatctaatgtgatagatattacggaagttgttttgatgggaagnnnnnnnncagagagatttcagtagggttttgagagattcgagtgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
395724 |
tttagacaaacatctaatgtgatagatattacggaagttgttttgatgggaagaaaaaaa--agagagatttcagtagggttttgagagattcgagtgtc |
395821 |
T |
|
| Q |
399 |
atggttatatggttttagggggaagtggaaatggaaatgaataagaataagaaaatagagtttgaacattataagctatatacnnnnnnnngtaaacagt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
395822 |
atggttatatggttttagggggaagtggaaatggaaatgaataagaataagaaaatagagtttgaacattataagctatatac-tttttttgtaaacagt |
395920 |
T |
|
| Q |
499 |
tatgaagaacttacgagaataagataaaaacaatgttcggcctatg |
544 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
395921 |
tatgaagaacttaccagaataagataaaaacaatgtttggcctatg |
395966 |
T |
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