View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1393_low_4 (Length: 485)

Name: NF1393_low_4
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1393_low_4
NF1393_low_4
[»] chr5 (3 HSPs)
chr5 (125-319)||(1068352-1068556)
chr5 (430-485)||(39082170-39082225)
chr5 (383-413)||(9370958-9370988)
[»] chr6 (1 HSPs)
chr6 (381-485)||(15599521-15599625)
[»] chr3 (6 HSPs)
chr3 (380-485)||(44052522-44052628)
chr3 (383-485)||(20553147-20553250)
chr3 (383-485)||(44352234-44352337)
chr3 (383-485)||(54536724-54536827)
chr3 (424-485)||(18323423-18323484)
chr3 (381-481)||(53029607-53029708)
[»] chr1 (3 HSPs)
chr1 (382-485)||(27242470-27242574)
chr1 (28-76)||(779518-779566)
chr1 (411-481)||(19516380-19516450)
[»] chr8 (2 HSPs)
chr8 (383-485)||(9599903-9600006)
chr8 (383-485)||(28395369-28395472)
[»] chr2 (4 HSPs)
chr2 (383-485)||(1285229-1285332)
chr2 (386-485)||(1194909-1195008)
chr2 (385-481)||(36148332-36148429)
chr2 (383-481)||(35030483-35030581)
[»] chr7 (4 HSPs)
chr7 (383-485)||(9356442-9356545)
chr7 (383-481)||(46072156-46072255)
chr7 (383-485)||(28467748-28467852)
chr7 (390-458)||(28537566-28537636)
[»] chr4 (5 HSPs)
chr4 (385-485)||(17625040-17625141)
chr4 (383-481)||(12269139-12269238)
chr4 (383-442)||(20614055-20614114)
chr4 (434-485)||(20614675-20614726)
chr4 (381-413)||(49228074-49228106)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 1068352 - 1068556
Alignment:
Q  125 tttgatttgattacatgcaatcccaattagaactcagattactgccacgtcagacaat----------ggaacttttgatttttcatttttgaagtattt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  1068352 tttgatttgattacatgcaatcccaattagaactcagattactgccacgtcagacaaattggtgcaaaggaacttttgatttttcatttttgaagtattt 1068451  T
Q  215 tggaaccttgtaaatggctgaattttggtggtaatcacatctttgtctttatctttaaatataaatgctagatagtctgcgggtagccctaattaaccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1068452 tggaaccttgtaaatggctgaattttggtggtaatcacatctttgtctttatctttaaatataaatgctagatagtctgcgggtagccctagttaaccat 1068551  T
Q  315 aatcc 319  Q
    |||||    
T  1068552 aatcc 1068556  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 485
Target Start/End: Original strand, 39082170 - 39082225
Alignment:
Q  430 taaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaatatc 485  Q
    ||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  39082170 taaatattataattgaaattcataaaaattatatacaatttcatccaaaaaatatc 39082225  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Complemental strand, 9370988 - 9370958
Alignment:
Q  383 cagtggcggatcttgccgaaaatattggggg 413  Q
    |||||||||||||||||||||||||||||||    
T  9370988 cagtggcggatcttgccgaaaatattggggg 9370958  T

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Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 15599625 - 15599521
Alignment:
Q  381 atcagtggcggatcttgccgaaaatattgggggagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaa 480  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  15599625 atcagtggcggatcttgccgaaaatattgggggtgcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaa 15599526  T
Q  481 atatc 485  Q
    |||||    
T  15599525 atatc 15599521  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 380 - 485
Target Start/End: Original strand, 44052522 - 44052628
Alignment:
Q  380 gatcagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaa 478  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  44052522 gatcagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaa 44052621  T
Q  479 aaatatc 485  Q
    |||||||    
T  44052622 aaatatc 44052628  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 20553147 - 20553250
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  20553147 cagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaatttataaaagttatatacaatttcattcaaaaaa 20553246  T
Q  482 tatc 485  Q
    ||||    
T  20553247 tatc 20553250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 44352337 - 44352234
Alignment:
Q  383 cagtggcggatcttgccgaaaatattggggg-agcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  44352337 cagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaa 44352238  T
Q  482 tatc 485  Q
    ||||    
T  44352237 tatc 44352234  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 54536724 - 54536827
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  54536724 cagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaa 54536823  T
Q  482 tatc 485  Q
    ||||    
T  54536824 tatc 54536827  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 485
Target Start/End: Complemental strand, 18323484 - 18323423
Alignment:
Q  424 atgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaatatc 485  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  18323484 atgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaatatc 18323423  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 481
Target Start/End: Original strand, 53029607 - 53029708
Alignment:
Q  381 atcagtggcggatcttgccgaaaatattggggga-gcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaa 479  Q
    ||||||||||| ||||||  |||||||||||||| ||||| ||||| ||||| |||||| ||| |||||| || ||||  | ||||||| ||||||||||    
T  53029607 atcagtggcgggtcttgctcaaaatattgggggaagcggttaatattaactatatattacaattgaaattcatgaaagccacatacaatttcatccaaaa 53029706  T
Q  480 aa 481  Q
    ||    
T  53029707 aa 53029708  T

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Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 382 - 485
Target Start/End: Original strand, 27242470 - 27242574
Alignment:
Q  382 tcagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaa 480  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  27242470 tcagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaa 27242569  T
Q  481 atatc 485  Q
    |||||    
T  27242570 atatc 27242574  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 779566 - 779518
Alignment:
Q  28 cactttccccatccttcttctccgtcccaaccccggacttctcatcgtt 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  779566 cactttccccatccttcttctccgtcccaaccccggacttctcatcgtt 779518  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 19516450 - 19516380
Alignment:
Q  411 gggagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||| | |||||| |||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||    
T  19516450 gggagcagcaaatattaactaaatattataattgaaattcataaaagtcatatacaatttcatccaaaaaa 19516380  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 9599903 - 9600006
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  9599903 cagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaa 9600002  T
Q  482 tatc 485  Q
    ||||    
T  9600003 tatc 9600006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 28395369 - 28395472
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  28395369 cagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaa 28395468  T
Q  482 tatc 485  Q
    ||||    
T  28395469 tatc 28395472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 1285229 - 1285332
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  1285229 cagtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaa 1285328  T
Q  482 tatc 485  Q
    ||||    
T  1285329 tatc 1285332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 386 - 485
Target Start/End: Original strand, 1194909 - 1195008
Alignment:
Q  386 tggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaatat 484  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||    
T  1194909 tggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcataaaagttatata-aatttcatccaaaaaatat 1195007  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 481
Target Start/End: Original strand, 36148332 - 36148429
Alignment:
Q  385 gtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    ||||||||| ||||| ||||||| | || ||| || |||||| |||||||||||||||| |||||| |||||||| ||||||||| ||||| ||||||    
T  36148332 gtggcggattttgcctaaaatatcgaggagagtggcaaatattaactaaatattataattgaaattcataaaagtcatatacaatgtcatctaaaaaa 36148429  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 35030483 - 35030581
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggggagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    ||||||||||||||||| ||| |||  ||||||| | |||| | ||||||||||||||||  ||||| |||||||| ||||||||| |  |||||||||    
T  35030483 cagtggcggatcttgcccaaattatcaggggagccgcaaatgttaactaaatattataattaaaattcataaaagtcatatacaattttttccaaaaaa 35030581  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 9356442 - 9356545
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||    
T  9356442 cagtggcggatcttgtcgaaaatattggggggagcggtaaatatgaactaaatattataattaaaattcataaaagttatatacaatttcatccaaaaaa 9356541  T
Q  482 tatc 485  Q
    ||||    
T  9356542 tatc 9356545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 46072255 - 46072156
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgg-gggagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  46072255 cagtggtggatcttgccgaaaatattggagggtgcggtaaatatgtactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaa 46072156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 28467852 - 28467748
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggg-gagcggtaaatatgaactaaa-tattataatcgaaatttataaaagttatatacaatctcatccaaaaa 480  Q
    |||||| |||||||  | |||||||||||| |||||  |||||| ||||||| ||||||||| |||||| |||||||||||| | ||| |||| ||||||    
T  28467852 cagtggtggatcttatccaaaatattggggagagcgacaaatattaactaaaatattataattgaaattcataaaagttatacataatttcattcaaaaa 28467753  T
Q  481 atatc 485  Q
    |||||    
T  28467752 atatc 28467748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 28537636 - 28537566
Alignment:
Q  390 ggatcttgccgaaaatattggggg-agcggtaaatatgaactaaa-tattataatcgaaatttataaaagt 458  Q
    |||||||||| ||||||||||||| ||||  |||||| ||||||| ||||||||| |||||| ||||||||    
T  28537636 ggatcttgcccaaaatattggggggagcgtcaaatattaactaaaatattataattgaaattcataaaagt 28537566  T

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Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 385 - 485
Target Start/End: Original strand, 17625040 - 17625141
Alignment:
Q  385 gtggcggatcttgccgaaaatattggggg-agcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaata 483  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  17625040 gtggcggatcttgccgaaaatattggggggaagggtaaatatgaactaaatattataattgaaattcataaaagttatatacaatttcatccaaaaaata 17625139  T
Q  484 tc 485  Q
    ||    
T  17625140 tc 17625141  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 12269139 - 12269238
Alignment:
Q  383 cagtggcggatcttgccgaaaatattggg-ggagcggtaaatatgaactaaatattataatcgaaatttataaaagttatatacaatctcatccaaaaaa 481  Q
    ||||||| ||||||||| ||||||||||  ||||||| |||||| ||||||||||||||||  ||||| |||||||| ||||| ||| |||||| |||||    
T  12269139 cagtggccgatcttgccaaaaatattggaaggagcggcaaatattaactaaatattataatttaaattcataaaagtcatatataatttcatccgaaaaa 12269238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 20614055 - 20614114
Alignment:
Q  383 cagtggcggatcttgccgaaaatattgggggagcggtaaatatgaactaaatattataat 442  Q
    ||||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||    
T  20614055 cagtggcggatcttggcgaaaatattgggggtacggtaaatataaactaaatattataat 20614114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 434 - 485
Target Start/End: Original strand, 20614675 - 20614726
Alignment:
Q  434 tattataatcgaaatttataaaagttatatacaatctcatccaaaaaatatc 485  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  20614675 tattataattgaaatttataaaagttatatacaatttcatccaaaaaatatc 20614726  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 49228106 - 49228074
Alignment:
Q  381 atcagtggcggatcttgccgaaaatattggggg 413  Q
    ||||||||||||||||||| |||||||||||||    
T  49228106 atcagtggcggatcttgcccaaaatattggggg 49228074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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