View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1393_low_6 (Length: 436)
Name: NF1393_low_6
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1393_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 356
Target Start/End: Complemental strand, 4459665 - 4459449
Alignment:
| Q |
140 |
aaataaagtttacaacgaggtgaatgagtatagcattaatagaaagtgaaattactggatgcaactaaattagttagccagatgatatatattgtcacat |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4459665 |
aaataaagtttacaacggggtgaatgagtatagaattaatagaaagtgaaattactggatgtaactaaattagttagccagatgatatatattgtcacat |
4459566 |
T |
|
| Q |
240 |
atagagtgatacattaattgatcaaagctactttatcttttgaccgaattaatagctaattattcctcttcaataacagtaatttatctcttaatttctg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4459565 |
atagagtgatacattaattgatcaaagctactttatcttttgacagaattaatagctactcattcctcttcaataacagtaatttatctcttaatttctg |
4459466 |
T |
|
| Q |
340 |
ctttgtgttgatatggt |
356 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4459465 |
ctttgtgttgatatggt |
4459449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 140 - 318
Target Start/End: Complemental strand, 35013532 - 35013351
Alignment:
| Q |
140 |
aaataaagtttacaacgaggtgaatgagtatagcattaatagaaagtgaaattactggatgcaactaaattagttagccagatgatatatattgtcacat |
239 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35013532 |
aaataaagtttagaacgagatgaatgagtatagaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacat |
35013433 |
T |
|
| Q |
240 |
atagagtgatacattaattgatcaaagctactttatcttttgaccgaattaat---agctaattattcctcttcaataacag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35013432 |
atagagtgatacattaattgatcaaagctactttatcttttgacagaattaatcaaagctacttattcctcttcaataacag |
35013351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 330 - 422
Target Start/End: Complemental strand, 4459448 - 4459356
Alignment:
| Q |
330 |
ttaatttctgctttgtgttgatatggtcttattttatgtttatagaatcatcacaagataacaagtgatggtaaccttcaaacatccgcaaca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
4459448 |
ttaatttctgctttgtgttgatatggtcttattttatgtttatagaatcatcacaagatgacaagtgatggtaatcttcaaacatccgcaaca |
4459356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 30992535 - 30992472
Alignment:
| Q |
359 |
tattttatgtttatagaatcatcacaagataacaagtgatggtaaccttcaaacatccgcaaca |
422 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30992535 |
tattttatgtttatagaatcattgcaagatgacaagtgatggtaaccttcaaacatccgcaaca |
30992472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 43071110 - 43071173
Alignment:
| Q |
359 |
tattttatgtttatagaatcatcacaagataacaagtgatggtaaccttcaaacatccgcaaca |
422 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43071110 |
tattttatgtttatagaatcattgcaagatgacaagtgatggtaaccttcaaacatccgcaaca |
43071173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 779566 - 779481
Alignment:
| Q |
28 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtttaannnnnnnctccgcagcagcctttgctttctcctgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||| |
|
|
| T |
779566 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcg-ttcacttttatccccgcagcagcctttgctttctcctgg |
779481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University