View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1393_low_9 (Length: 358)

Name: NF1393_low_9
Description: NF1393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1393_low_9
NF1393_low_9
[»] chr5 (2 HSPs)
chr5 (259-351)||(32466706-32466798)
chr5 (223-275)||(32466516-32466568)
[»] chr1 (4 HSPs)
chr1 (142-221)||(46832146-46832225)
chr1 (142-221)||(46831956-46832035)
chr1 (40-109)||(46831854-46831923)
chr1 (40-109)||(46832043-46832112)
[»] chr8 (2 HSPs)
chr8 (40-109)||(8672403-8672471)
chr8 (142-221)||(8672504-8672583)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 32466706 - 32466798
Alignment:
Q  259 aacactattgttttataaatactctggcagcactgcctaagtataaaataagcgataaagttggtttgagagtgttcctcgatagtattatct 351  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32466706 aacactattgttttataaatacttaggcagcactgtctaagtataaaataagcgataaagttggtttgagagtgttcctccatagtattatct 32466798  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 32466516 - 32466568
Alignment:
Q  223 ttcgagaaaatctacaacaaataattcgctagaaataacactattgttttata 275  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32466516 ttcgggaaaatccacaacaaataattcgctagaaataacactattgttttata 32466568  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 46832146 - 46832225
Alignment:
Q  142 ccacatttatcttgccatcgatctgattgctgtgttgttgaaattcgtgagcttttagagtcgtgctacatagcactact 221  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  46832146 ccacatttatcttgccatcgacctgattgccgtgtcgttgaaattcgtgggcttttagagtcgtgctacatagcactact 46832225  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 46831956 - 46832035
Alignment:
Q  142 ccacatttatcttgccatcgatctgattgctgtgttgttgaaattcgtgagcttttagagtcgtgctacatagcactact 221  Q
    ||||||||||||||||||| | |||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||    
T  46831956 ccacatttatcttgccatcaacctgattgccgtgtcgtcgaaattcgtgggcttttagagtcgtgctacatagcactact 46832035  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 46831854 - 46831923
Alignment:
Q  40 gaaaatgctttatggcatgatggctatataagcacgaaggcacacgactatttcaaaccattggataacc 109  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||||||||||| || |||||||||||    
T  46831854 gaaaatgctttatggcacgatggtcatataagcacgaaggcacacgactatttcagactattggataacc 46831923  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 46832043 - 46832112
Alignment:
Q  40 gaaaatgctttatggcatgatggctatataagcacgaaggcacacgactatttcaaaccattggataacc 109  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||||||||||| | ||||||||||||    
T  46832043 gaaaatgctttatggcacgatggtcatataagcacgaaggcacacgactatttcagatcattggataacc 46832112  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 8672403 - 8672471
Alignment:
Q  40 gaaaatgctttatggcatgatggctatataagcacgaaggcacacgactatttcaaaccattggataacc 109  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  8672403 gaaaatgctttatggcacgatggccatataagcacgaa-gcacacaactatttcagaccattggataacc 8672471  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 8672504 - 8672583
Alignment:
Q  142 ccacatttatcttgccatcgatctgattgctgtgttgttgaaattcgtgagcttttagagtcgtgctacatagcactact 221  Q
    ||||||||||||||||| ||| |||||||  |||| || |||||||||| ||||||||||  ||||||||||||||||||    
T  8672504 ccacatttatcttgccaacgacctgattgtcgtgtcgtcgaaattcgtgggcttttagaggtgtgctacatagcactact 8672583  T

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