View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_high_13 (Length: 567)

Name: NF13940_high_13
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_high_13
NF13940_high_13
[»] chr6 (3 HSPs)
chr6 (16-222)||(21750804-21751008)
chr6 (356-480)||(14518936-14519061)
chr6 (357-488)||(23903475-23903606)
[»] chr7 (1 HSPs)
chr7 (361-508)||(33321278-33321426)
[»] chr8 (2 HSPs)
chr8 (356-504)||(39849914-39850062)
chr8 (369-471)||(30085184-30085287)
[»] chr3 (2 HSPs)
chr3 (402-488)||(51634682-51634768)
chr3 (403-488)||(30337462-30337547)
[»] chr1 (2 HSPs)
chr1 (357-488)||(9258745-9258876)
chr1 (448-501)||(27811377-27811430)
[»] scaffold0430 (1 HSPs)
scaffold0430 (431-488)||(11326-11383)
[»] chr5 (1 HSPs)
chr5 (409-461)||(12575031-12575083)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 21750804 - 21751008
Alignment:
Q  16 tgaaatacattattaatcatagccaagcattagccatatatagatcaaattcaaaactagaattattgaaagttgcaaaaacaagg-ttgcttctcatta 114  Q
    ||||||||||||||||||||||||| || |||||||| |||| ||||||||||||    ||||||||||||||||||||||||||  |||||||||||||    
T  21750804 tgaaatacattattaatcatagccaggcgttagccatttatatatcaaattcaaag---gaattattgaaagttgcaaaaacaagaattgcttctcatta 21750900  T
Q  115 cattttacttaagcgacttttagtgtgtcgagaagcattggcaactactgttgtcttgaatagttggaaagattgggttaagcaaggggatgcgaataca 214  Q
     || |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||||    
T  21750901 tatcttacttaagcgacttttagtgtgtcgtgaagctttggcaactaccgttgtattgaatagttggaaagattgggttaagcaagggggtgagaataca 21751000  T
Q  215 agaaaaat 222  Q
    ||||||||    
T  21751001 agaaaaat 21751008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 480
Target Start/End: Complemental strand, 14519061 - 14518936
Alignment:
Q  356 ataacgtaccgattaatatattagcacgtaccacgaaccggaatagcgtatcgactatgtataccc-cctacgtacccgattctttgaaggttgcgtacc 454  Q
    ||||||||||| |||||| ||||||| ||||| ||||||| |||||||||  ||||||| |||||| || | |||||| |||||||||||||| |||| |    
T  14519061 ataacgtaccggttaatacattagcatgtaccgcgaaccgcaatagcgtacggactatgcataccctcccatgtacccaattctttgaaggttacgtaac 14518962  T
Q  455 gcgtacccgaatccgtaccacgtacc 480  Q
    |||| || ||| ||||||||| ||||    
T  14518961 gcgtgcctgaacccgtaccacatacc 14518936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 488
Target Start/End: Original strand, 23903475 - 23903606
Alignment:
Q  357 taacgtaccgattaatatattagcacgtaccacgaaccggaatagcgtatcgactatgtataccccctacgtacccgattctttgaaggttgcgtaccgc 456  Q
    |||||||||||||| |||||| | ||||||||||||||  |  |  |||  |||| |||||||||||||||||||  | | |||||| ||  || |||||    
T  23903475 taacgtaccgattattatatttgaacgtaccacgaacccaagcaaagtactgactctgtataccccctacgtacctaaatttttgaaagtcccgaaccgc 23903574  T
Q  457 gtacccgaatccgtaccacgtaccgaagcgaa 488  Q
    |||||| ||| ||||||||||| |||||||||    
T  23903575 gtacccaaattcgtaccacgtatcgaagcgaa 23903606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 361 - 508
Target Start/End: Complemental strand, 33321426 - 33321278
Alignment:
Q  361 gtaccgattaatatattagcacgtaccacgaaccggaatagcgtatcgactatgtataccccc-tacgtacccgattctttgaaggttgcgtaccgcgta 459  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||| |||||||| ||||||||||| ||||  |||||||||    
T  33321426 gtaccgattaatatattagcacgtaccgcgaaccgaaatagcgtaccaactatgtatacccccctacgtacctgattctttgaaagttgtataccgcgta 33321327  T
Q  460 cccgaatccgtaccacgtaccgaagcgaaccgcgaattatgtgacattg 508  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  33321326 cccgaacccgtaccacgtaccgaagcgaactgcgaattatgtgacattg 33321278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 504
Target Start/End: Complemental strand, 39850062 - 39849914
Alignment:
Q  356 ataacgtaccgattaatatattagcacgtaccacgaaccggaatagcgtatcgactatgtataccccctacgtacccgattctttg-aaggttgcgtacc 454  Q
    |||||||||| ||||||| ||||||||||| | ||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| |||||  ||||||    
T  39850062 ataacgtaccaattaatacattagcacgtaacgcgaaccgaaatagcgtaccgactatgtataccccc-acgtacccaattctttgaaaggtgccgtacc 39849964  T
Q  455 gcgtacccgaatccgtaccacgtaccgaagcgaaccgcgaattatgtgac 504  Q
    | ||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  39849963 gggtacccgaacctgtaccacataccgaagcgaaccgcgaattatgtgac 39849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 471
Target Start/End: Complemental strand, 30085287 - 30085184
Alignment:
Q  369 taatatattagcacgtaccacgaaccggaatagcgtatcgactatgtatacccccta-cgtacccgattctttgaaggttgcgtaccgcgtacccgaatc 467  Q
    |||||||||||  |||||| ||||||  | || |||| | ||||||||||||||||| || |||| |||||| ||  || ||||||||||||||||||||    
T  30085287 taatatattagagcgtaccgcgaacctaattaacgtaccaactatgtataccccctatcgaacccaattcttcgagagtggcgtaccgcgtacccgaatc 30085188  T
Q  468 cgta 471  Q
    ||||    
T  30085187 cgta 30085184  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 51634768 - 51634682
Alignment:
Q  402 cgtatcgactatgtataccccctacgtacccgattctttgaaggttgcgtaccgcgtacccgaatccgtaccacgtaccgaagcgaa 488  Q
    |||| ||||||||||||||||||| |||||  ||||||| || ||| || |||| ||||||||| ||||||||||||||||||||||    
T  51634768 cgtaccgactatgtataccccctatgtaccgaattctttaaatgttacgaaccgtgtacccgaacccgtaccacgtaccgaagcgaa 51634682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 488
Target Start/End: Original strand, 30337462 - 30337547
Alignment:
Q  403 gtatcgactatgtataccccctacgtacccgattctttgaaggttgcgtaccgcgtacccgaatccgtaccacgtaccgaagcgaa 488  Q
    |||||||||||  ||||||||||||||||  ||||||| |  |||||| |||||||| || ||| |||||||||||| ||||||||    
T  30337462 gtatcgactatacataccccctacgtaccgaattctttaagagttgcgaaccgcgtatccaaattcgtaccacgtactgaagcgaa 30337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 488
Target Start/End: Complemental strand, 9258876 - 9258745
Alignment:
Q  357 taacgtaccgattaatatattagcacgtaccacgaaccggaatagcgtatcgactatgtataccccctacgtacccgattctttgaaggttgcgtaccgc 456  Q
    |||||||||||||| |||||| | |  ||||||||||   ||  ||||| ||||| |||| |||||| |||||||   || |||||| || ||| |||||    
T  9258876 taacgtaccgattattatatttgaatataccacgaactcaaactgcgtaccgactctgtacaccccccacgtacctagttttttgaaagtcgcgaaccgc 9258777  T
Q  457 gtacccgaatccgtaccacgtaccgaagcgaa 488  Q
    || |||||||  ||||| ||||||||||||||    
T  9258776 gtgcccgaatttgtaccgcgtaccgaagcgaa 9258745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 501
Target Start/End: Original strand, 27811377 - 27811430
Alignment:
Q  448 gcgtaccgcgtacccgaatccgtaccacgtaccgaagcgaaccgcgaattatgt 501  Q
    ||||||| |||||||||| |||||||||||||| |||||||   ||||||||||    
T  27811377 gcgtaccacgtacccgaacccgtaccacgtaccaaagcgaattacgaattatgt 27811430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 11383 - 11326
Alignment:
Q  431 ccgattctttgaaggttgcgtaccgcgtacccgaatccgtaccacgtaccgaagcgaa 488  Q
    |||||||||||||  || || ||| |||||||||| ||||||||||||||||| ||||    
T  11383 ccgattctttgaaaattacgaaccacgtacccgaacccgtaccacgtaccgaaacgaa 11326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 12575083 - 12575031
Alignment:
Q  409 actatgtataccccctacgtacccgattctttgaaggttgcgtaccgcgtacc 461  Q
    |||||||||||||||||||||||  ||||||| || ||| || ||||||||||    
T  12575083 actatgtataccccctacgtaccaaattctttaaatgttacgaaccgcgtacc 12575031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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