View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_14 (Length: 530)
Name: NF13940_high_14
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 523
Target Start/End: Original strand, 26516125 - 26516626
Alignment:
| Q |
20 |
ctgccaccctttggtgccttgccctttgcattggaacctcttttgcctgccttaccaattccatttttcctcacatccttcttcatcctgcgatcaacaa |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
26516125 |
ctgccaccctttggtgcctttccctttgcattggaacctcttttgcctgccttaccaattccatttttcctcatattcttcttcatcctgcgatcaacaa |
26516224 |
T |
|
| Q |
120 |
ggacttttcccctgccagtcttaacttggacacctttctttgcaactacatactccttctgaggcctttttggaacagcnnnnnnnatatagtcgatcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26516225 |
ggacttttcccctgccagtcttaacttggacacctttctttgcaactacatactccttctgaggcctttttggaacag-attttttatatagtcgatcaa |
26516323 |
T |
|
| Q |
220 |
tttgcttactctttgaacgattggatatgtctgactgatctgatatagcattggccttcttgcgtattttctcaatcttcctcatagcaacacgcttctt |
319 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26516324 |
tttgcttactctttgaacgatcggatatgtctgactgatctgatatagcattggccttcttgcgtattttctcaatcttcctcatagcaacacgcttctt |
26516423 |
T |
|
| Q |
320 |
gcgtgctttggcctcagccaccttctttgcaggccgagtatcaatttctttaaattgggctttcattgcagcaacttgctctttcgtgataggcttaact |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26516424 |
gcgtgctttggcctcagccaccttctttgcaggccgagtat-aatttctttagattgggctttcattgcagcaacttgctctttcgtgataggcttaact |
26516522 |
T |
|
| Q |
420 |
ggtacacggtatttcctttcctcatcgagaaaccacttcggcaatccctggtcatcaaacacgtacttattatatgcatcatctagcatgtattcccttt |
519 |
Q |
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| T |
26516523 |
ggtacacggtgtttcctttcctcatcgagaaaccacttcggcaatccctggtcatcaaacacatacttattatatgcatcatctagcatgtattcccttt |
26516622 |
T |
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| Q |
520 |
gctt |
523 |
Q |
| |
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|||| |
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| T |
26516623 |
gctt |
26516626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 523
Target Start/End: Original strand, 30372583 - 30373087
Alignment:
| Q |
21 |
tgccaccctttggtgccttgcc---ctttgcattggaacctcttttgcctgccttaccaattccatttttcctcacatccttcttcatcctgcgatcaac |
117 |
Q |
| |
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|||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||| || ||| |||||||| |||| ||||||||||||||||||| |
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| T |
30372583 |
tgccgccctttggtgccttgccgccctttgccttggaacctcttttgcctcccttacccataccacttttcctcgcatcactcttcatcctgcgatcaac |
30372682 |
T |
|
| Q |
118 |
aaggacttttcccctgccagtcttaacttggacacctttctttgcaactacatactccttctgaggcctttttggaacagcnnnnnnnatatagtcgatc |
217 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||| ||||| || |
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| T |
30372683 |
aaggacttttcccttaccagccttaacttggacacctttctttgcagttacatactccttttgaggcctttttggaactgcgttttt-atagagtcggtc |
30372781 |
T |
|
| Q |
218 |
aatttgcttactctttgaacgattggatatgtctgactgatctgatatagcattggccttcttgcgtattttctcaatcttcctcatagcaacacgcttc |
317 |
Q |
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||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||| |
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| T |
30372782 |
aatttgcttactcttggaacgatcagatatgtctggctgatctgatatagcgttggccttcttgcggactttctcaatcttcctcattgcaacacgcttc |
30372881 |
T |
|
| Q |
318 |
ttgcgtgctttggcctcagccaccttctttgcaggccgagtatcaatttctttaaattgggctttcattgcagcaacttgctctttcgtgataggcttaa |
417 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||| || ||||| |||||||||| |||||| |||| |||||||| |
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| T |
30372882 |
tttcgtgctttggcctcagccaccttctttgcaggtctagtatcaattgctttaaattgtgccttcatagcagcaacttcctcttttgtgacaggcttaa |
30372981 |
T |
|
| Q |
418 |
ctggtacacggtatttcctttcctcatcgagaaaccacttcggcaatccctggtcatcaaacacgtacttattatatgcatcatctagcatgtattccct |
517 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||| |
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| T |
30372982 |
ctggtacacggtgttttctttcctcatcgagaaaccacttgggcaatccctggtcatcaaacatgtatttattatatgcatcatctagcatctgttccct |
30373081 |
T |
|
| Q |
518 |
ttgctt |
523 |
Q |
| |
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|||||| |
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|
| T |
30373082 |
ttgctt |
30373087 |
T |
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