View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13940_high_15 (Length: 490)

Name: NF13940_high_15
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13940_high_15
NF13940_high_15
[»] chr7 (3 HSPs)
chr7 (142-278)||(48018468-48018608)
chr7 (372-468)||(48018313-48018405)
chr7 (11-49)||(48018809-48018847)
[»] chr1 (1 HSPs)
chr1 (213-275)||(35408657-35408719)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 48018608 - 48018468
Alignment:
Q  142 gaagaaacattattcgatatgaagaaattcaaatnnnnnnnn----cattattctgaagcttttgataattgcactagttaggtcagtccggagctttat 237  Q
    ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48018608 gaagaaacattattcgatatgaagaaattcaaattaaaaaaaaaaacattattctgaagcttttgataattgcactagttaggtcagtccggagctttat 48018509  T
Q  238 ggtgacagcagacccagattatttacttactggacggttag 278  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48018508 ggtgacagcagacccagattatttacttactggacggttag 48018468  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 48018405 - 48018313
Alignment:
Q  372 tattctctaattttactcgttaaaattcttgttgattaaacaatttaattataagcacgcagagtgacacatatcaagcaactggatgctacaacct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48018405 tattctctaattttactcgttaaaattcttgttgattaaacaattta----taagcacgcagagtgacacatatcaagcaactggatgctacaacct 48018313  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 48018847 - 48018809
Alignment:
Q  11 ttattctaaactccaattttcaatttcagattatagtaa 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48018847 ttattctaaactccaattttcaatttcagattatagtaa 48018809  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 35408657 - 35408719
Alignment:
Q  213 tagttaggtcagtccggagctttatggtgacagcagacccagattatttacttactggacggt 275  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||    
T  35408657 tagtcaggtcagtccggagctttatggtgacaacagacccagattattcacgtattggacggt 35408719  T

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