View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_17 (Length: 484)
Name: NF13940_high_17
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Complemental strand, 14507381 - 14506930
Alignment:
| Q |
11 |
tccaagaatataatgaaaaaggagacttgaaatcccattatgaggagtttctatattatgaatttgaaaagaattcaaagaatagctaaaaattagctag |
110 |
Q |
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| T |
14507381 |
tccaaaaatataatgaaaaatgagacttgaaatcccactatgaggagtttctatattatgaatttgaaaagaattcaaagaatagctaaaaattagctag |
14507282 |
T |
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| Q |
111 |
ccaatcagtgcttttatttctctctcgtcatgtatgattgagatacatctgccaatccatttccctcttgccaggtatgactgcgcacatgcaaatccaa |
210 |
Q |
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| T |
14507281 |
ccaatcagtgcttttattactctctcgtcatgtatgattgagatacacctgccaatccatttccctcttgtcaggtatgactgtgcacctgcaaatccaa |
14507182 |
T |
|
| Q |
211 |
ctctaaaagctcatgtacgtgtcacatcaaagtaggcggtttaccattaactttaaaattttcaatgatcatgtcaaacagggtttgagtcatttttcac |
310 |
Q |
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| T |
14507181 |
ctttaaaagctcgtgaacgtgtcgcatcaaagtaggcggtttaccattaactttgaaattttcaatgatcatgtcaaacagggtttgagtcatttttcac |
14507082 |
T |
|
| Q |
311 |
ctgaagatgaccaaaaccttgtctccaaacaagttgcatacccatatacattctccacatctcagcgctaagagcatcacaagtttcaattttacgtgag |
410 |
Q |
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| T |
14507081 |
ctaaagatgaccaaaaccttgtctccaagcaagttgcatacccatgtacattctccacatctcagaactaagagcatcacaagtttcaattttacatgag |
14506982 |
T |
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| Q |
411 |
taatcaggcaatcatctcctatcaaagtgtaaaaggagaccaccacacccaa |
462 |
Q |
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| T |
14506981 |
tactcggtcaatcatctcctatcagagtgttgaaggagaccaccacacccaa |
14506930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 38063432 - 38063353
Alignment:
| Q |
324 |
aaaccttgtctccaaacaagttgcatacccatatacattctccacatctcagcgctaagagcatcacaagtttcaatttt |
403 |
Q |
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||||||||||||||| |||| ||||| |||| |||||||||||||| ||||| | ||||| ||||| ||||| ||||| |
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| T |
38063432 |
aaaccttgtctccaagcaagctgcattcccaagtacattctccacatttcagcacagagagcgtcacaggtttcgatttt |
38063353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 8059777 - 8059910
Alignment:
| Q |
17 |
aatataatgaaaaaggagacttgaaatcccattatgaggagtttctatattatgaatttgaaaagaattcaaagaatagctaaaaattagctagccaatc |
116 |
Q |
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||||| || |||||||||||| |||| | ||||| ||||||| || || |||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
8059777 |
aatatcatcaaaaaggagactcgaaacctcattaggaggagtctccatgacatgaatgtgaaaagaatctaaagaaaagct-aaaattagcaagccaatc |
8059875 |
T |
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| Q |
117 |
agtgcttttatttctctctcgtcatgtatgattga |
151 |
Q |
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| T |
8059876 |
agcacttctatttccctcgcgccaggtatggttga |
8059910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 18623681 - 18623769
Alignment:
| Q |
324 |
aaaccttgtctccaaacaagttgcatacccatatacattctccacatctcagcgctaagagcatcacaagtttcaattttacgtgagta |
412 |
Q |
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||||||||||||||| ||||||| || |||| ||||||| ||||| ||||| | ||||| ||||| ||||||||||| ||||||| |
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| T |
18623681 |
aaaccttgtctccaagcaagttgtattcccaagtacattcctcacatttcagcacagagagcgtcacatgtttcaattttgtgtgagta |
18623769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 32599730 - 32599813
Alignment:
| Q |
32 |
gagacttgaaatcccattatgaggagtttctatattatgaatttgaaaagaattcaaagaatagctaaaaattagctagccaatc |
116 |
Q |
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| T |
32599730 |
gagacctgaaatcctactaggaggagtctccataacatgaatttgaaacgaattaagagaaaagct-aaaattagctagccaatc |
32599813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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