View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_2 (Length: 763)
Name: NF13940_high_2
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 1430193 - 1429695
Alignment:
| Q |
11 |
gagcacagagacacaaacctatctgaaggagatttggatcgcatatcagttgcgatgagacaagaagaagaagaagnnnnnnnnnnncgagagtgaagta |
110 |
Q |
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| T |
1430193 |
gagcacagagacacaaatctatctgaaggagatttggatcgcatatcagttgagatgagacaagaaggaaaaaaaaaag---------gagagtgaagta |
1430103 |
T |
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| Q |
111 |
tagtggaagagaaattatgatgatgaggatgggatctttcttgagtcaatatta-ttgttgtaaaagatgttaaggcaatttcgtggaaacttcctacat |
209 |
Q |
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| T |
1430102 |
tagtggaagagaaactatgatga---ggataggatctt----gagtcaatatttgttgttgtaaaagatgttaaggcaatttcgtggaaacttcctacat |
1430010 |
T |
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| Q |
210 |
tactggtacaccgactatcgtgcgcacacaccaaatgcaccaaacctactattgttatttagtggggcttttttggcatgcatgcagctcccatgcgcct |
309 |
Q |
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| T |
1430009 |
tactggtacaccgactatcgtgcgcacacaccaaatgcaccaaacctactattgttatttagtggg-cttttttggcatgcatgcagctcccatgcgcct |
1429911 |
T |
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| Q |
310 |
cacgtttttcttttaatttgactttagtatgttttcgtttatatataagcaaaatgctcagcatagtggaatcaattcaagtttcaataagattaccttt |
409 |
Q |
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| T |
1429910 |
cacgtttttcttttaattttactttagtatgttttcgtttatatataaccaaaatgctgagcatagtggaatgaattaaagtttgaataagattaccttt |
1429811 |
T |
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| Q |
410 |
aacaaagagaacttatatcgataaaaaacacaatgaaagaaggaagagtaaatatattctatagttgcaaaataaattaatannnnnnnactta-tccat |
508 |
Q |
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| T |
1429810 |
aacaaagagaacttatatcgata-aaaacacaatgaaagaaggaagagtaaatataatatataattgcaaaagaaattaatatttttttacttattccat |
1429712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 583 - 745
Target Start/End: Complemental strand, 1429635 - 1429473
Alignment:
| Q |
583 |
cattacaagtacttctttactacccatgttgtcttggtgatgagtaggaaggttggttgtttaacgaatagacaaggaataatatcatatattaacttca |
682 |
Q |
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| T |
1429635 |
cattacaagtatttctttactacccatgttgtcttggtgatgagtaggaaggttggttgtttaacgaatagacaaggaataatatcatatattaacttca |
1429536 |
T |
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| Q |
683 |
atttttagcctattttttcaaacatatcccacattaacctaagccacattacaaccttaaaag |
745 |
Q |
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| T |
1429535 |
atttttagcctattttttcaaacatataccacattaacctaagccacattacaaccttaaaag |
1429473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 691 - 733
Target Start/End: Original strand, 34332434 - 34332476
Alignment:
| Q |
691 |
cctattttttcaaacatatcccacattaacctaagccacatta |
733 |
Q |
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| T |
34332434 |
cctattttttcaaatatatcccacattaacttaagtcacatta |
34332476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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