View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_20 (Length: 465)
Name: NF13940_high_20
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 102 - 446
Target Start/End: Original strand, 32943250 - 32943594
Alignment:
| Q |
102 |
tcttgatcgaacttctactaatattatgtctacacgtgtaggttaatattgctgatccaaataagcccaattccaaaattcgtatcgaggatctgaaaac |
201 |
Q |
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| T |
32943250 |
tcttgatcgaacttcgactaatattatttgtacacgtgtaggttaatattgctgatccaaataagcccaattccaaaattcgtatcgaggatctgaaaac |
32943349 |
T |
|
| Q |
202 |
tggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttggatcttatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32943350 |
tggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttggatcttatt |
32943449 |
T |
|
| Q |
302 |
taccaatatacattgtttgttgatggatttggtaagtttgcatgcttgaaattgcattcactattattttactgtcatattcaaattaagatgacatact |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32943450 |
taccaatatacattgtttgttgatggatttggtaagtttgcatgcttgaaattgcattcactattattttactgtcatattcaaattaagatgacatact |
32943549 |
T |
|
| Q |
402 |
caaaaataggagcatgcctctagtattcttaggcaacctaagtta |
446 |
Q |
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| T |
32943550 |
caaaaataggagcatacctctagtattcttaggcaacctaagtta |
32943594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 102 - 343
Target Start/End: Original strand, 32950431 - 32950672
Alignment:
| Q |
102 |
tcttgatcgaacttctactaatattatgtctacacgtgtaggttaatattgctgatccaaataagcccaattccaaaattcgtatcgaggatctgaaaac |
201 |
Q |
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| T |
32950431 |
tcttgatcgaacttcgactaatattatttgtacacgtgtaggttaatattgctgatccaaataagcccaattccaaaattcgtatcgaggatctgaaaac |
32950530 |
T |
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| Q |
202 |
tggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttggatcttatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32950531 |
tggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttggatcttatt |
32950630 |
T |
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| Q |
302 |
taccaatatacattgtttgttgatggatttggtaagtttgca |
343 |
Q |
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| T |
32950631 |
taccaatatacattgtttgttgatggatttggtaagtttgca |
32950672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 32943134 - 32943212
Alignment:
| Q |
10 |
acatcatcattttattacgtgcctacaggggtatgtatcgaggatttcatgtcggatttcatgacattcactcatttga |
88 |
Q |
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| T |
32943134 |
acatcatcattttattacgtgcctacaggggtatgtatcgaggatttcatgtcggatttcatgacattcactcatttga |
32943212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 32950315 - 32950393
Alignment:
| Q |
10 |
acatcatcattttattacgtgcctacaggggtatgtatcgaggatttcatgtcggatttcatgacattcactcatttga |
88 |
Q |
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| T |
32950315 |
acatcatcattttattacgtgcctacaggggtatgtatcgaggatttcatgtcggatttcatgacattcactcatttga |
32950393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 10328274 - 10328209
Alignment:
| Q |
275 |
cttccatatgcatgcttggatcttatttaccaatatacattgtttgttgatggatttggtaagttt |
340 |
Q |
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||||||||| |||| |||||||| | ||||||||||||||| |||| |||||||| |||| |||| |
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| T |
10328274 |
cttccatatttatgcatggatcttgtataccaatatacattgcttgtggatggattcggtatgttt |
10328209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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