View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_24 (Length: 444)
Name: NF13940_high_24
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 12699565 - 12699159
Alignment:
| Q |
20 |
tgattgtgttgttcatttattggaagacttgaaactagcgaatccacatgttgcaacaactcgacattaaagcacagatcgacaactttatatcaatgtt |
119 |
Q |
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| T |
12699565 |
tgattgtgttgttcatttattggaagacttgaaactagcgaatccacatgttgcaacaactcgacattaaagcacggatcgacaactttatagcagcgtt |
12699466 |
T |
|
| Q |
120 |
gctctgacaattatacctttatggtcggttcacacggctgatcaagatgatgctgagtccaggttcaatttggtgacaaggcaattttgcggtggcagcc |
219 |
Q |
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| T |
12699465 |
gctctgacaattatacctttatggtcggttcacaccgctgatcaagatgatgctgactccaggttcaatttggtgacaaggcaattttgcggtggcagcc |
12699366 |
T |
|
| Q |
220 |
accatggcgttgtcatgttaaatgaaatgttgacgcatctttctttgatcaactaaaagaacaagtatatgcacttgtatccgggacaaggaaggaactt |
319 |
Q |
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| T |
12699365 |
accatggcgttgtcgtgttaaatgaaatgttgacgcatctttctttgatcaactaaaagaacaagtatatgtacttgtatccgtgacgaggaaggaactt |
12699266 |
T |
|
| Q |
320 |
ttgtgttggcaaaaactattcccatatctctgaaatgtcatgtacccatgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacatgtc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12699265 |
ttgtgttggcaaaaactattcccatatctctgaaatgtcatgtacccatgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacatgtc |
12699166 |
T |
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| Q |
420 |
cttcaac |
426 |
Q |
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| T |
12699165 |
cttcaac |
12699159 |
T |
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