View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_26 (Length: 437)
Name: NF13940_high_26
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 40152160 - 40151732
Alignment:
| Q |
1 |
atgacttttaacataaatggatcgatattaaacttattcatgatagatcacaccatatcaaccattgaannnnnnnaattctcttgaatcctatcatgtc |
100 |
Q |
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| T |
40152160 |
atgacttttaacataaatagattgatattaaacttattcatgatagatcacgccatatcaacaattgaatttttttaattctattgaatcctatcatgtc |
40152061 |
T |
|
| Q |
101 |
tctcctacactagaattattaatattatcttcaatcaaagaactaatgtaatcaacaccaattctattatcacttgatgaaaatgtagcagagattagt- |
199 |
Q |
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| T |
40152060 |
tctcctacactagaattattaatattaccttcaatcaaagaactaatgtaatcaacaccaatttcattatcacttgatgaaaatgtagcagagattagtt |
40151961 |
T |
|
| Q |
200 |
-------attttgaaaacctctaaaaccatcatatttttgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattggatccaaaac |
292 |
Q |
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| T |
40151960 |
aggaagtattttaaaaacctctaaaaccatcatatttttgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattggatccaaaac |
40151861 |
T |
|
| Q |
293 |
aagtcaatgattaaaattatttttgtttttataactaatcaaaatttcactaccaaatgcaacaacaccaacaccactttcatattgaagcacctccaag |
392 |
Q |
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| T |
40151860 |
aagtcaatgattaaaataatttttgttttgttaactaatcaaaattccactaccaaatgcaacaacaccaacaccactttcatattgaagcacctccaag |
40151761 |
T |
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| Q |
393 |
atcagagcttttattagtattcatattaa |
421 |
Q |
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| T |
40151760 |
atcagagcttttattagtattcatattaa |
40151732 |
T |
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Back To:
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 49899014 - 49898877
Alignment:
| Q |
231 |
tgaatcagtcttttgaggtttagcaactgaatcaagactagaagattgattggatccaaaacaagtcaatg-attaaaattatttttgtttttataacta |
329 |
Q |
| |
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||||||| ||||| |||||||||| |||||| ||||||||||||| | || |||||||||| || ||||| | ||||| || ||| || || ||||| |
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| T |
49899014 |
tgaatcaatctttgaaggtttagcagctgaattaagactagaagatggcttagatccaaaaccagccaatgaactaaaaggatctttattactagaacta |
49898915 |
T |
|
| Q |
330 |
atcaaaatttcactaccaaatgcaacaacaccaacacc |
367 |
Q |
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|| |||| |||||||| ||||| ||||||||||||| |
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| T |
49898914 |
attccaattccactaccagatgcagcaacaccaacacc |
49898877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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