View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_3 (Length: 743)
Name: NF13940_high_3
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 17 - 726
Target Start/End: Complemental strand, 6917102 - 6916395
Alignment:
| Q |
17 |
gaacattgctgcgtctgtcactgtgtgactgtttctaaaccttagctttgtgaaggtgataattcagaatgaatcaatgaactccaaattgttgaaagga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6917102 |
gaacattgctgcgtctgtcactgtgtgactgtttctagaccttagctttgtgaaggtgataattcagaatgaatcaatgaactccaaattgttgaaagga |
6917003 |
T |
|
| Q |
117 |
cttggatatggccgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgata |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
6917002 |
cttggatatggtcgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcaca--tttacagtcagaagtgcattgata |
6916905 |
T |
|
| Q |
217 |
agtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916904 |
agtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaa |
6916805 |
T |
|
| Q |
317 |
tttaatattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgt |
416 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916804 |
tttaatgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgt |
6916705 |
T |
|
| Q |
417 |
tgacccnnnnnnntgaaccaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcattcagctgc |
516 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916704 |
tgacccaaaaaaatgaaccaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcattcagctgc |
6916605 |
T |
|
| Q |
517 |
cttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916604 |
cttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtc |
6916505 |
T |
|
| Q |
617 |
atcgaacgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
6916504 |
atcgaacgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacac |
6916405 |
T |
|
| Q |
717 |
cttttctctt |
726 |
Q |
| |
|
|||||||||| |
|
|
| T |
6916404 |
cttttctctt |
6916395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
155 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
243 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 504 - 612
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
504 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
603 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
|
| Q |
604 |
ctttccctg |
612 |
Q |
| |
|
||||||||| |
|
|
| T |
15036041 |
ctttccctg |
15036049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
609 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
663 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 724
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
662 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
724 |
Q |
| |
|
||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University