View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13940_high_30 (Length: 398)
Name: NF13940_high_30
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 113 - 331
Target Start/End: Original strand, 6096648 - 6096864
Alignment:
| Q |
113 |
aaggttgctgccacgaaaaatcatagtaaacggaccatttttgttgaaatcaaaagtcgataatcccatctcaccatttggttatgtctcaaatgaagaa |
212 |
Q |
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| T |
6096648 |
aaggttgctgccacgaaaaatcatagtaaacggaccatttttgttgaaatcaaaagtcgataatcctatctcaccatctggttatgtctcaaatgaagaa |
6096747 |
T |
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| Q |
213 |
ttgttcgaattaaaagcatctactataaacaaacaatcagtactcacaagcaaaaaccaacatcgacnnnnnnnnngttcattcaaaaatccacataact |
312 |
Q |
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| T |
6096748 |
ttgttcgaatt-aaagcatctactataaacaaacaatcagtactcacaagcaaaaaccaacatcaac-aagaaaaagttcattcaaaaatccacataact |
6096845 |
T |
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| Q |
313 |
cctagtgcccacaccttgg |
331 |
Q |
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| T |
6096846 |
cctagtgcccacaccttgg |
6096864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 6096554 - 6096609
Alignment:
| Q |
59 |
gtagtaacgaaaggcatggatgccatttaaatattgttgactaaaaatcacattaa |
114 |
Q |
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| T |
6096554 |
gtagtaacgaaaagcatggatgccatttaaatattgttgactaaaaatcacattaa |
6096609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 6097035 - 6097083
Alignment:
| Q |
328 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcat |
376 |
Q |
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| T |
6097035 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcat |
6097083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 6096488 - 6096530
Alignment:
| Q |
5 |
atcaaaggggaatcaaatctacttccaatgtggaatttgttat |
47 |
Q |
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| T |
6096488 |
atcaaaggggaatcaaatctacttccaatgtggaattttttat |
6096530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 27766374 - 27766422
Alignment:
| Q |
328 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcat |
376 |
Q |
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| T |
27766374 |
ttgggttattcctttctattctaaaaaattccctaagtcatgaagtcat |
27766422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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