View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13940_high_31 (Length: 393)
Name: NF13940_high_31
Description: NF13940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13940_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 16134005 - 16134351
Alignment:
| Q |
18 |
agatgttgccggattatctcaaagaaagatccgatgttggattgctttcgataaacacagttgttcagaagatcgctatattgcttctgaacttttgtag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16134005 |
agatgttgccggattatctcaaagaaagatccgatgttgaattgctttcgataaacacagttgttcagaagatcgctacattgcttctgaacttttgtag |
16134104 |
T |
|
| Q |
118 |
gaaatcaaaaccggaacaagtttcgttaagtaatttttagaatcaatttatggttatcgtagatcacgtttttactacttttacacagannnnnnnacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| | || || | |||||||||||||||||||||||||| ||| |
|
|
| T |
16134105 |
gaaatcaaaaccggaacaagtttcgttaagtaatttttagaagtaattttt--acatagttgttcacgtttttactacttttacacaga-ttgtttaccg |
16134201 |
T |
|
| Q |
218 |
attcttttccc-gtttaaatggttaaaaatcaaaaccaggaccatgtaataatgtcatgcagtaaaagcatgtgatatttttgtga---attgataactc |
313 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| || ||| |
|
|
| T |
16134202 |
attcttttccctgtttaaatggttaaaaatcaaaaccaggaccatgtaacgttgtcatgcagtaaaagcatgtggtatttttgtgaactattgttatctc |
16134301 |
T |
|
| Q |
314 |
ccattcttatcttatggttataaaggtactttcagaagttgtgaggatat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
16134302 |
ccattcttatcttatggttataaaggtactttcagaagttgcgagaatat |
16134351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 323
Target Start/End: Complemental strand, 31236323 - 31236114
Alignment:
| Q |
113 |
tgtaggaaatcaaaaccggaacaagtttcgttaagtaatttttagaatcaatttatggttatcgtagatcacgtttttactacttttacacagannnnnn |
212 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||| ||| |||||||||||||||||||| |||||||| ||||| || ||||||||| || |
|
|
| T |
31236323 |
tgtaggaaatcaaaaccagagcaagttttcgtaagtactttctagaatcaatttatggttatggtagatcatgttttatctccttttacactgaattttt |
31236224 |
T |
|
| Q |
213 |
nacctattcttttcccg-tttaaatggttaaaaatcaaaaccaggaccatgtaataatgtcatgcagtaaaagcatgtgatatttttgtgaattgataac |
311 |
Q |
| |
|
| | ||||||| || |||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| | | |
|
|
| T |
31236223 |
ctc-tcttctttttccaatttatatggtaaaaaatcaaaaccaggac-atgtaatgatgtcatgcagtaaaagcatgtggtatttttgtgaattgtcatc |
31236126 |
T |
|
| Q |
312 |
tcccattcttat |
323 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
31236125 |
tcccatgcttat |
31236114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 31252997 - 31252912
Alignment:
| Q |
97 |
attgcttctgaacttttgtaggaaatcaaaaccggaacaag---tttcgttaagtaatttttagaatcaatttatggttatcgtaga |
180 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||||| |||| |||||||| ||| ||||||| ||| |||||| ||||| |
|
|
| T |
31252997 |
attgcttctgaa-ttttataggaaatcaaaaccagaacaagttttttccttaagtaactttaagaatcagttttaggttatggtaga |
31252912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University